Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D10_e76_08.seq
         (1521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    36   0.019
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    35   0.026
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    30   0.97 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    29   1.7  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    28   2.9  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   2.9  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    27   5.2  

>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARDRK 360
           V++PTREL          L    N +    +GGAPK EQAR  K
Sbjct: 241 VVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK 284


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 19/45 (42%), Positives = 21/45 (46%)
 Frame = +3

Query: 360 RGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
           RG     A  GRL D  +   TN +R T     EADR  D G EP
Sbjct: 244 RGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEP 288



 Score = 34.7 bits (76), Expect = 0.034
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
           VLAPTREL         + G     R T  +GG P+  Q RD
Sbjct: 200 VLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRD 241


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARDRK 360
           A ++ PTREL               N R   A+GGAP ++Q  D K
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLK 539


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +1

Query: 106 KNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXG---EVKALYAXVLAPTRELXXXXXXXX 276
           K+  +  QTG      L   LP    +I LP         +YA ++APTREL        
Sbjct: 179 KDAFIEAQTGSGKT--LAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236

Query: 277 XELGXXPNAR---XTXAHGGAPKR-EQARDRK 360
            +L   P +         GG  K+ E+AR RK
Sbjct: 237 NKLNNNPLSHWIVSCNVIGGEKKKSEKARIRK 268


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 205 EVKALYAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQAR 351
           + K + A V+APTREL          +   PN R     GG   ++Q R
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQR 237


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
           ++G     A  GRL D  ++G  +          EADR  D G EP
Sbjct: 303 DQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEP 348


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
 Frame = +1

Query: 55  KKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKAL----Y 222
           K+P +  R       Q K+L+   +TG          +P  I I  LP      +    Y
Sbjct: 270 KEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFI--IPLIIAISKLPPLTESNMHLGPY 327

Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQA 348
           A VLAPTREL         +       R     GG    EQ+
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,904
Number of Sequences: 5004
Number of extensions: 30188
Number of successful extensions: 55
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)