Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D10_e76_08.seq
(1521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 41 0.003
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 38 0.016
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 35 0.15
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 35 0.19
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 35 0.19
03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816... 35 0.19
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 34 0.34
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 33 0.45
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 32 1.0
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 31 1.8
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 2.4
07_01_0975 + 8223269-8224354 31 2.4
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667... 30 5.5
04_03_0904 + 20717005-20718087 29 9.7
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 40.7 bits (91), Expect = 0.003
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEV-KALYA 225
G +P G +G++++ QTG L LP + + + P E
Sbjct: 175 GFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKT--LSYLLPGLVHVGAQPRLEQGDGPIV 232
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
+LAPTREL + G R T +GGAPK Q RD
Sbjct: 233 LILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRD 275
Score = 37.9 bits (84), Expect = 0.021
Identities = 21/45 (46%), Positives = 22/45 (48%)
Frame = +3
Query: 360 RGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
RG A GRL D E G TN +R T EADR D G EP
Sbjct: 278 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEP 322
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 38.3 bits (85), Expect = 0.016
Identities = 27/85 (31%), Positives = 34/85 (40%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
Q +++V +TG G LP + I L VLAPTREL
Sbjct: 186 QCQDVVAIAKTGSGKTLGYL--LPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAV 243
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G T +GGAPK Q RD
Sbjct: 244 KFGRSSRISSTCLYGGAPKGPQLRD 268
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 35.1 bits (77), Expect = 0.15
Identities = 23/85 (27%), Positives = 33/85 (38%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
+ +++V +TG G +P I + L VL+PTREL
Sbjct: 216 RNRDIVAVAKTGSGKTLGYL--IPGFILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAK 273
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G +GGAPK Q RD
Sbjct: 274 KFGRSSRISSVCLYGGAPKGPQLRD 298
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + + + EADR D G EP
Sbjct: 300 ERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEP 345
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 34.7 bits (76), Expect = 0.19
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + + PP
Sbjct: 449 ERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPR 508
Query: 534 G 536
G
Sbjct: 509 G 509
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
A +L+PTREL + + A+GGAP +Q R+
Sbjct: 404 ALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRE 447
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 34.7 bits (76), Expect = 0.19
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + + PP
Sbjct: 363 ERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPR 422
Query: 534 G 536
G
Sbjct: 423 G 423
Score = 32.3 bits (70), Expect = 1.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
A +L+PTREL + R A+GGAP +Q R+
Sbjct: 318 ALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRE 361
>03_05_0619 -
26180980-26181105,26181329-26181417,26181518-26181629,
26181711-26181848,26182004-26182150,26182458-26182532,
26182627-26182668,26183033-26183152,26183806-26183880,
26184051-26184113,26184690-26184759,26184877-26185006,
26185097-26185328
Length = 472
Score = 34.7 bits (76), Expect = 0.19
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYA-QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYA 225
G K+P TR + +A +G++L+ QTG G + LP I L + +AL+A
Sbjct: 60 GWKEP-TRIQAEAIPHALEGRDLIGLGQTGSGKT-GAFA-LP--IIQALLKQDKPQALFA 114
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQA 348
VL+PTREL LG T GG + +QA
Sbjct: 115 CVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQA 155
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 33.9 bits (74), Expect = 0.34
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
A +L+PTREL + R A+GGAP +Q RD
Sbjct: 238 ALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRD 281
Score = 33.9 bits (74), Expect = 0.34
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + PP
Sbjct: 283 ERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPP 342
Query: 534 G 536
G
Sbjct: 343 G 343
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 33.5 bits (73), Expect = 0.45
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +3
Query: 363 GXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
G A GRL D E TN +R T EADR D G EP
Sbjct: 188 GVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEP 231
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 32.3 bits (70), Expect = 1.0
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTP 527
ERG A GRL D E+ + + EADR D G EP + R N P
Sbjct: 241 ERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMP 298
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 31.5 bits (68), Expect = 1.8
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVK-ALYA 225
G +KP T G++++ +TG LP + I+ P E +
Sbjct: 238 GYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFV--LPMIVHIMDQPELEKEEGPIG 295
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARDRK 360
V APTREL + N R +GG K +Q ++ K
Sbjct: 296 VVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELK 340
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.1 bits (67), Expect = 2.4
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
Q +++V +TG G +P I + + VLAPTREL
Sbjct: 640 QNRDIVAIAKTGSGKTLGYL--IPAFIHLRRYQNNPMLGPTVLVLAPTRELASQIQDEAV 697
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G T +GG K Q R+
Sbjct: 698 KFGRSSRVSCTCLYGGTSKGLQLRE 722
Score = 29.5 bits (63), Expect = 7.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + + + EADR D G EP
Sbjct: 724 ERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEP 769
>07_01_0975 + 8223269-8224354
Length = 361
Score = 31.1 bits (67), Expect = 2.4
Identities = 11/42 (26%), Positives = 17/42 (40%)
Frame = +3
Query: 480 TGSEPXTXEXHRPNTPPNGXPXXXPXQRPXRXNGNAPXGXPT 605
+ P + P++ P+G P P P +P G PT
Sbjct: 240 SSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPT 281
>07_03_1566 +
27766336-27766393,27766480-27766609,27766728-27766797,
27767134-27767196,27767741-27767815,27768035-27768154,
27768508-27768549,27768651-27768725,27768909-27769055,
27769165-27769302,27769448-27769562,27769658-27769746,
27770062-27770184
Length = 414
Score = 29.9 bits (64), Expect = 5.5
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYA-QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYA 225
G K P TR + +A QG++++ QTG LP I L +A
Sbjct: 2 GWKAP-TRIQAEVIPFALQGRDVIGVGQTGSGKTAAFA--LP--IIQALLEHEHRPCFFA 56
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQ 345
VLAPTREL LG + + + GG P+ Q
Sbjct: 57 CVLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQ 96
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +1
Query: 637 RPTNPXXXXXXKPNDPXXXXPKXXPXPXPXXQXTRXTPTNPXP 765
+P P KPN P P+ P P P T P P
Sbjct: 243 KPAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTP 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,476,056
Number of Sequences: 37544
Number of extensions: 294009
Number of successful extensions: 606
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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