Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D10_e76_08.seq
(1521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 38 0.028
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 37 0.037
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 29 9.8
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 37.5 bits (83), Expect = 0.028
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E TN +R T EADR D G EP
Sbjct: 180 ERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEP 225
Score = 33.5 bits (73), Expect = 0.45
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
VL PTREL +G R T +GGAPK Q R+
Sbjct: 137 VLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRE 178
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 37.1 bits (82), Expect = 0.037
Identities = 37/160 (23%), Positives = 40/160 (25%), Gaps = 13/160 (8%)
Frame = +2
Query: 440 HXXXPXXSRPQGGHGQRAT--NKXKXPTXHSPXRXXPXRTAXKAXKKXRKRXXGXPNXTT 613
H P Q H QR + P + P T A K P TT
Sbjct: 14 HQRPPLLPSQQIPHHQRPPLLPSQQLPHNRTTTPTTPTTTTPPATTTPTKPTNTTPPATT 73
Query: 614 GPNKKXXHGQPTRXXXXPPNXTT--RXQXPXKXXXTQXPXXXXPGXPXRTXGPKXXKXXR 787
P K P P TT P K T P P P T P +
Sbjct: 74 TPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPGTTTPTK 133
Query: 788 XXNTEPXEXTHXKTHXXXTRP---------TXRPPPXXXP 880
T P T T P T PP P
Sbjct: 134 PTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTP 173
Score = 36.7 bits (81), Expect = 0.049
Identities = 34/153 (22%), Positives = 39/153 (25%), Gaps = 2/153 (1%)
Frame = +2
Query: 437 THXXXPXXSRPQGGHGQRATNKXKXPTXHSPXRXXPXRTAXKAXKKXRKRXXGXPNXTTG 616
T P + P P +P + P T A P TT
Sbjct: 45 TTPTTPTTTTPPATTTPTKPTNTTPPATTTPTK--PTTTTPPATTTPTTPTTTTPPATTT 102
Query: 617 PNKKXXHGQPTRXXXXPPNXTTR--XQXPXKXXXTQXPXXXXPGXPXRTXGPKXXKXXRX 790
P K P P TT P K T P P P T P +
Sbjct: 103 PTKPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKP 162
Query: 791 XNTEPXEXTHXKTHXXXTRPTXRPPPXXXPXXK 889
T P T T T T PP P +
Sbjct: 163 TTTTPPATT---TPTKST--TTTPPATTTPTTR 190
Score = 31.1 bits (67), Expect = 2.4
Identities = 23/113 (20%), Positives = 27/113 (23%)
Frame = +1
Query: 421 RQTXKDAPXXXXXKPTARXTRAASHXQXKXTDXTLPXTAXPXAXRXKGXKEXTETXPRXX 600
+ T P T A+ K T T P T P + T P
Sbjct: 77 KPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPT--KPTTTTPPGTTTPTKP 134
Query: 601 QRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXPXPXXQXTRXTPTNP 759
P T+PT P P P P T T P
Sbjct: 135 TTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKSTTTTPPATTTP 187
Score = 30.3 bits (65), Expect = 4.2
Identities = 24/115 (20%), Positives = 27/115 (23%), Gaps = 4/115 (3%)
Frame = +1
Query: 427 TXKDAPXXXXXKPTARXTRAASHXQXKXTDXTLPXTAXPXAXRXKGXKEXTE----TXPR 594
T P T T+ + T T P T P A T T P
Sbjct: 59 TTPTKPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPTKPTTTTPPATTTPT 118
Query: 595 XXQRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXPXPXXQXTRXTPTNP 759
P T+PT P P P P T T P
Sbjct: 119 KPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTP 173
Score = 29.5 bits (63), Expect = 7.4
Identities = 20/101 (19%), Positives = 21/101 (20%), Gaps = 1/101 (0%)
Frame = +1
Query: 583 TXPRXXQRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXP-XPXXQXTRXTPTNP 759
T P P T+PTN P P P P P T T
Sbjct: 45 TTPTTPTTTTPPATTTPTKPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
Query: 760 XPXXXKXXAXXKHXARRXXXXKNXXXXXXAHPXAPPXXXTP 882
P A PP TP
Sbjct: 105 KPTTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTP 145
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/77 (20%), Positives = 21/77 (27%)
Frame = +3
Query: 510 HRPNTPPNGXPXXXPXQRPXRXNGNAPXGXPTXRRAXTKXGXTANQPXXXXXXQTXRPXX 689
++ P P P +P N P PT + NQP T +P
Sbjct: 210 YKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQ 269
Query: 690 XXPXXXTXPXAPPXXXQ 740
P P Q
Sbjct: 270 PTNLPTDQPTNQPANLQ 286
>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +3
Query: 483 GSEPXTXEXHRPNTPPNGXPXXXPXQRPXRXNGNAPXGXPTXRRAXTKXGXTANQP 650
G +P +PN P P Q+P + G P PT ++ G NQP
Sbjct: 77 GKQPNQPTDQQPNKPTGQQPNQPTGQQPNQPTGQQPK-DPTGQQPNDPTGKQFNQP 131
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 486 SEPXTXEXHRPNTPPNGXPXXXPXQRPXRXNGNAPXGXPTXRRAXTKXGXTANQP 650
+ P T + +PN P + P Q+P + G P PT ++ G N P
Sbjct: 70 NNPLTPKGKQPNQPTDQQPNKPTGQQPNQPTGQQP-NQPTGQQPKDPTGQQPNDP 123
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.5 bits (63), Expect = 7.4
Identities = 28/121 (23%), Positives = 34/121 (28%)
Frame = +1
Query: 403 TPWKRARQTXKDAPXXXXXKPTARXTRAASHXQXKXTDXTLPXTAXPXAXRXKGXKEXTE 582
TP T KP+ + + Q T P T P A T
Sbjct: 19 TPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPT----PTTPSPTAPTQTTPTPATP 74
Query: 583 TXPRXXQRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXPXPXXQXTRXTPTNPX 762
T + P T+PT KP P P P P T+ TP P
Sbjct: 75 TPTTPTPKTPTPTTSTLTKPTPATTPTPTKPT-PTAHTP-TTPTPTAHTP-TKPTPKTPT 131
Query: 763 P 765
P
Sbjct: 132 P 132
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 29.1 bits (62), Expect = 9.8
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEV-----K 213
G K P R Q ++++ +TG +P + I+ LP E +
Sbjct: 120 GYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFA--IPLLVWIMGLPKIERDNDADQ 177
Query: 214 ALYAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPK 336
YA +LAPTREL + G R GGA +
Sbjct: 178 GPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGADR 218
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTG 485
+ G A GRL D + TN R T EADR D G
Sbjct: 638 QEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMG 680
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 425 KXTKTHXXXPXXSRPQGGHGQRATNKXKXPTXHSP 529
K H P S PQG G A + P H+P
Sbjct: 429 KIATQHVESPVASEPQGREGYHAEDAFDTPLAHTP 463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873,440
Number of Sequences: 59808
Number of extensions: 296446
Number of successful extensions: 461
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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