Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D10_e76_08.seq
(1521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 41 0.002
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 39 0.011
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 31 2.8
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 5.0
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 30 5.0
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 8.7
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 8.7
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical protein
C30H6.11 protein.
Length = 460
Score = 41.1 bits (92), Expect = 0.002
Identities = 32/217 (14%), Positives = 36/217 (16%)
Frame = +3
Query: 795 TXSPXXXXTEKXTXXXXGPPXGPPXXXNPXXKXPQATXPXKKRXAPXXXXXRTPXTXXXX 974
T + T T P T + P TP T
Sbjct: 67 TTTTSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPT 126
Query: 975 XXAXXXTXTAXXTXHXXPRXXXXAXTXPXXXXXXPTXXXRXXSXXXXHPXXTXSXXXNXX 1154
T T T T P PT + P T +
Sbjct: 127 TTTTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTT 186
Query: 1155 XKKXXXTXXXXTXGKERXKXQXXGXXXXXXXXXNXXXPPPXNXXKTXKXXRTXXXXTQXX 1334
T T P T T T
Sbjct: 187 TTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTP---TTTTTTTTTPTTTTTTPTT 243
Query: 1335 XXHPXXXXXXXTXXTPPXPXXTRTTTAAXRXXXAXTP 1445
P T TP T T TP
Sbjct: 244 TTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTP 280
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/114 (18%), Positives = 23/114 (20%), Gaps = 1/114 (0%)
Frame = +1
Query: 427 TXKDAPXXXXXKPTARXTRAASHXQXKXTDXTLPXTAXPXAXRXKGXKEXTETXPRXXQR 606
T P PT T + T T P T T T P
Sbjct: 163 TTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTT 222
Query: 607 XDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXPXPXXQ-XTRXTPTNPXP 765
T PT P Q T+ T T P
Sbjct: 223 TPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTP 276
Score = 29.1 bits (62), Expect = 8.7
Identities = 23/183 (12%), Positives = 24/183 (13%)
Frame = +3
Query: 951 TPXTXXXXXXAXXXTXTAXXTXHXXPRXXXXAXTXPXXXXXXPTXXXRXXSXXXXHPXXT 1130
TP T T T T P T P + T
Sbjct: 77 TPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTT 136
Query: 1131 XSXXXNXXXKKXXXTXXXXTXGKERXKXQXXGXXXXXXXXXNXXXPPPXNXXKTXKXXRT 1310
T T P T
Sbjct: 137 TETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTAP 196
Query: 1311 XXXXTQXXXXHPXXXXXXXTXXTPPXPXXTRTTTAAXRXXXAXTPXPXXXQXAXXXXNXX 1490
T T T TTT TP
Sbjct: 197 TTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTT 256
Query: 1491 XRP 1499
P
Sbjct: 257 TTP 259
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 38.7 bits (86), Expect = 0.011
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D + GTTN ++ + EADR D G EP
Sbjct: 250 ERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEP 295
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 30.7 bits (66), Expect = 2.8
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVK-----ALYAXVLAPTRELXXXX 264
Q ++++ +TG LP + I SLP E + YA ++APTREL
Sbjct: 337 QNRDVIGVAETGSGKTAAFL--LPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQI 394
Query: 265 XXXXXELGXXPNARXTXAHGGAPKREQ 345
+ G + GGA + +Q
Sbjct: 395 EEETNKFGKLLGIKTVSVIGGASREDQ 421
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 29.9 bits (64), Expect = 5.0
Identities = 32/161 (19%), Positives = 43/161 (26%), Gaps = 2/161 (1%)
Frame = +2
Query: 404 PXGKGHDKXTKTH--XXXPXXSRPQGGHGQRATNKXKXPTXHSPXRXXPXRTAXKAXKKX 577
P +G D K + P ++PQGG + + P ++ TA +
Sbjct: 104 PKPRGGDPAGKPNPPAGDPSKTKPQGGDPAKPKPQTGDP--YATNSTVKPATAPVTPEPT 161
Query: 578 RKRXXGXPNXTTGPNKKXXHGQPTRXXXXPPNXTTRXQXPXKXXXTQXPXXXXPGXPXRT 757
K T P P PP TT+ P P
Sbjct: 162 VKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAP 221
Query: 758 XGPKXXKXXRXXNTEPXEXTHXKTHXXXTRPTXRPPPXXXP 880
N E T K T+PT PP P
Sbjct: 222 VPKPAPVTAPAPNPPAPENTTAKVE--TTKPTKAAPPAPTP 260
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 29.9 bits (64), Expect = 5.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 390 GRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSE 491
GR+ D + G TN R T EADR D G E
Sbjct: 398 GRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFE 431
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 29.1 bits (62), Expect = 8.7
Identities = 24/101 (23%), Positives = 35/101 (34%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAX 228
G +KP + GK+++ Q+G + I+ E + A
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATF------SVSILQRIDHEDPHVQAL 101
Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQAR 351
V+APTREL LG N GG R+ R
Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQR 142
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 29.1 bits (62), Expect = 8.7
Identities = 24/101 (23%), Positives = 35/101 (34%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAX 228
G +KP + GK+++ Q+G + I+ E + A
Sbjct: 48 GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATF------SVSILQRIDHEDPHVQAL 101
Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQAR 351
V+APTREL LG N GG R+ R
Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQR 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,698
Number of Sequences: 27780
Number of extensions: 218542
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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