Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D07_e52_07.seq
         (1589 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F20A4C Cluster: PREDICTED: hypothetical protein;...    34   9.0  
UniRef50_A5PMB4 Cluster: Novel protein similar to vertebrate hum...    34   9.0  

>UniRef50_UPI0000F20A4C Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 1265

 Score = 34.3 bits (75), Expect = 9.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 301 GTSISLHRVSFRAWDNDATT--THTHGLNSTSPH 206
           G S+  H  SF   DN  T   +HTHG++ TSPH
Sbjct: 187 GISVIQHTSSFEKHDNSKTDEPSHTHGVSHTSPH 220


>UniRef50_A5PMB4 Cluster: Novel protein similar to vertebrate human
           immunodeficiency virus type I enhancer binding protein
           2; n=2; Danio rerio|Rep: Novel protein similar to
           vertebrate human immunodeficiency virus type I enhancer
           binding protein 2 - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 1123

 Score = 34.3 bits (75), Expect = 9.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 301 GTSISLHRVSFRAWDNDATT--THTHGLNSTSPH 206
           G S+  H  SF   DN  T   +HTHG++ TSPH
Sbjct: 630 GISVIQHTSSFEKHDNSKTDEPSHTHGVSHTSPH 663


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,179,225
Number of Sequences: 1657284
Number of extensions: 11600049
Number of successful extensions: 21807
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21800
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 171393776875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)