Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D07_e52_07.seq
         (1589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   5.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   9.5  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 305 CLVSGRSDIARLASLPVWDNHFRCSHLCFFFVN 403
           C++SG S++AR+      +  FR   +CF+ VN
Sbjct: 75  CVISGASEVARVRDK---ERVFRIMEVCFYSVN 104


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -2

Query: 337 PRDI----APPAN*TFGTSISLHRVSFRAWDNDATTTHTHGLNSTSPHSLARLYPSRSHA 170
           P+DI    + PAN  +  S S     + + D D   TH+   N  SP S++      S  
Sbjct: 554 PKDIRSAASTPANPVYNRSSSQTSKGYNSSDYDLLRTHSLDENVNSPTSISSPSSKSSPF 613

Query: 169 SRTT 158
           ++TT
Sbjct: 614 TKTT 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,888
Number of Sequences: 5004
Number of extensions: 50698
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 897924822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)