Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D07_e52_07.seq
         (1589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0546 + 4329200-4329472                                           30   5.8  

>12_01_0546 + 4329200-4329472
          Length = 90

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 273 RSARGTTTLQQRIHTD*TQHHRTRSHAYTRLVR 175
           RS R T T+ QRI+T   QH+R RSH     +R
Sbjct: 3   RSTRSTPTMGQRINT---QHNRHRSHNIEAYIR 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,358,910
Number of Sequences: 37544
Number of extensions: 329949
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5151335952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)