Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D07_e52_07.seq
         (1589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53093| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.48 
SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               29   7.8  

>SB_53093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 33.5 bits (73), Expect = 0.48
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -3

Query: 312 TKHSERRYLCIAYRSARGTTTLQQRIHTD*TQHHRTRSHAYTRLVRTRHA 163
           TKH+E        R   G T + +  H D TQ  RT+   YT+ +RT+HA
Sbjct: 39  TKHAEYTQ---TMRIKHGYTQIMRTKHADYTQTMRTKHADYTQTMRTKHA 85


>SB_22476| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 269

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
 Frame = -3

Query: 480 KIILQDMFYFKHKCXTNQQTVNK---QIELTKKKHKWEHRK*LSHTGSDASRAISLRPLT 310
           K+  Q+       C  N  T  K   Q  LT +K   ++ + +    +D +R +     T
Sbjct: 63  KLCAQNTLTTSKLCAQNTLTTRKKCAQNTLTTRKPCAQNTQTMRTKHADYTRTMRTYTQT 122

Query: 309 KHSERRY----LCI--AYRSAR------GTTTLQQRIHTD*TQHHRTRSHAYTRLVRTRH 166
            H++  Y    +C   AY +        G T   +  H D TQ  RT+   YT+  RT+H
Sbjct: 123 MHTKHAYYTQTMCTKHAYYTQTMCTKHAGYTQTMRTKHADCTQTMRTKHAYYTQNKRTKH 182

Query: 165 A 163
           A
Sbjct: 183 A 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,147,828
Number of Sequences: 59808
Number of extensions: 417866
Number of successful extensions: 727
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5211572988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)