Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D06_e44_08.seq
(1503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.34
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 32 1.4
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37) 31 3.2
SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7) 31 3.2
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 4.2
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32) 30 5.5
SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 29 9.6
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 33.9 bits (74), Expect = 0.34
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = -1
Query: 543 IFFFLPRPSSRDLL---IPXTADDGILN*IT*FSKKSAAESTNLDSTCASLAFGSSDSGS 373
+ F LP P + DL+ P T G + F + AE ++DST + + GSS SG
Sbjct: 63 VSFSLP-PDNLDLVGSNTPPTLPPGYDSPADEFPNSNKAEDADIDSTSCTNSHGSSLSGR 121
Query: 372 KARADL-GEPLLSKVTPSIKVISLFDLKVSAYFKTFSLRHIYTSSST 235
+ D G+ + ++T V++L ++ K+F L + T
Sbjct: 122 RGLEDFKGDDIEDELTQLKAVVALRSIQKGDSPKSFDLSSVCDEGKT 168
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 31.9 bits (69), Expect = 1.4
Identities = 17/52 (32%), Positives = 33/52 (63%)
Frame = +2
Query: 320 IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFK 475
++ +T+ES+ RSA +L+ + D+ K R A+ E R VD+ + ++E+ + K
Sbjct: 1210 LEQLTMESEEMHRSASSLKAIVDKIKERLAESEDR-VDACSSYIEDLEKEIK 1260
>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
Length = 583
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 126 FTRLSYF*SRRCARCPPNRNLQILESVAAFWALLRTVSTM 245
F+ + YF ++ + PPN+ Q AAFW L T++T+
Sbjct: 334 FSSVIYFTEQKMSDGPPNKPSQFSSIPAAFWYTLVTMTTL 373
>SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 233 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 397
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 18 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 75
>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 233 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 397
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 72 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 129
>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
Length = 148
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 233 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 397
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 20 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 77
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 233 CVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPRS 361
CV D + C K+L Y ET+ K+ I ++ T+ +K S RS
Sbjct: 761 CVLQDEFYCSPAKILHYVETVFFKKLIAVVQ-KTVRAKQSQRS 802
>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
Length = 788
Score = 29.9 bits (64), Expect = 5.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 269 KVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADF 448
+VL+ ++L E + + +E KG+ +A L +P+A E ++ RL
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211
Query: 449 LENYV 463
+ NYV
Sbjct: 212 VVNYV 216
>SB_13456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 676 PGXDERNLGEEX--CFGCSKGDDTKXQRDESQNLQLSDSKERQK 551
P DER E CF +K + + QRD NL LSD ++++
Sbjct: 62 PSEDERASHMESFPCFNLTKPNQCESQRDNIVNLSLSDIIQKEQ 105
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 29.1 bits (62), Expect = 9.6
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +2
Query: 320 IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSAVXG 499
++GV+ S+ S A+ LE L+ E + + +SRL +S A+ + + K+ +
Sbjct: 739 LEGVSKASEQSKTHAQKLESLNKEQENKLVDAQSRLEESEAEGRKTAHL-LKLKEQKIES 797
Query: 500 IRRSLEE 520
+ + +EE
Sbjct: 798 LEKKVEE 804
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,443,029
Number of Sequences: 59808
Number of extensions: 452444
Number of successful extensions: 1333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4871177455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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