Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D05_e36_07.seq
         (1588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18840.1 68415.m02194 integral membrane Yip1 family protein c...    29   6.4  
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    26   9.8  

>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 155 PKKTLDASKKEQIVNDSLPNGGGDVPVKPPPSPS 256
           P    D  + E ++N+S+ +G G V    PPSP+
Sbjct: 11  PSSQSDIDEIENLINESVQSGPGTVLAARPPSPT 44


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 25.8 bits (54), Expect(2) = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 VNDSLPNGGGDVPVKPPPSP 253
           VN SLP     +P +PPP P
Sbjct: 189 VNSSLPYSAVAIPPQPPPHP 208



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 230 PVKPPPSPSLTDNA 271
           P  PPP PS+ D A
Sbjct: 208 PPPPPPPPSMYDAA 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,480,595
Number of Sequences: 28952
Number of extensions: 97980
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4279534848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)