Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D04_e28_08.seq
         (1544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     129   7e-32
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         114   2e-27
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   2e-04
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   9.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  129 bits (311), Expect = 7e-32
 Identities = 57/116 (49%), Positives = 81/116 (69%)
 Frame = +3

Query: 207 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEM 386
           M   + F L WNN+ +++++ F  L    D VDVTLA +GR L+AH++VLS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 387 FXMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLT 554
               P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  114 bits (274), Expect = 2e-27
 Identities = 52/112 (46%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
 Frame = +3

Query: 219 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMN 398
           + + L WNN+ +NM++ FH LL     VDVTLA     L+AHK+VLS CS YFQ++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 399 PTQHP-IVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 551
           P +HP I+  +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 2e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 207 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 323
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 572
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 9.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 574 LSSF*FPVKPFT*SCSAVLINDANSSCLTLTSP 476
           LSS      P T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,390
Number of Sequences: 438
Number of extensions: 7140
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)