Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D04_e28_08.seq
(1544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 48 1e-05
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 48 1e-05
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 43 6e-04
At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family pr... 42 0.001
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 42 0.001
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 41 0.002
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 41 0.003
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 40 0.003
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 40 0.006
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 38 0.018
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 37 0.031
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 37 0.031
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 37 0.031
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 36 0.054
At5g48510.1 68418.m05998 speckle-type POZ protein-related contai... 35 0.12
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 34 0.22
At2g40440.1 68415.m04990 BTB/POZ domain-containing protein conta... 34 0.29
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 32 0.88
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 32 1.2
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 31 2.7
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 30 3.6
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 29 8.2
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 48.4 bits (110), Expect = 1e-05
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +3
Query: 279 LLSRGDLVDVTLAAEGRLL--QAHKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSA 446
L S G+ D+ + L Q+HK++LS+ S F +MF M+ + ++L DVS A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403
Query: 447 LRDLLQFMYQGEVNVK 494
+ ++ FMY GE+N++
Sbjct: 404 FKAMMNFMYSGELNME 419
Score = 35.5 bits (78), Expect = 0.095
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 267 GFHGLLSRGDLVD-VTLAAEGRL-LQAHKLVLSVCSPYFQEMFXMNPTQHPIVFLKDVSH 440
G L L D V L E + + AHK++L F + + ++ L+ VS+
Sbjct: 200 GLGNFLESWQLSDTVFLVGEEEMDVPAHKVILQASGN-----FPLRSSDGDVIQLRGVSY 254
Query: 441 SALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEE 572
L LLQ++Y G + + ELA + + +V L Q EE
Sbjct: 255 PILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQCEE 297
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 48.4 bits (110), Expect = 1e-05
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +3
Query: 279 LLSRGDLVDVTLAAEGRLL--QAHKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSA 446
L S G+ D+ + L Q+HK++LS+ S F +MF M+ + ++L DVS A
Sbjct: 344 LYSTGEYSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEA 403
Query: 447 LRDLLQFMYQGEVNVK 494
+ ++ FMY GE+N++
Sbjct: 404 FKAMMNFMYSGELNME 419
Score = 35.5 bits (78), Expect = 0.095
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +3
Query: 267 GFHGLLSRGDLVD-VTLAAEGRL-LQAHKLVLSVCSPYFQEMFXMNPTQHPIVFLKDVSH 440
G L L D V L E + + AHK++L F + + ++ L+ VS+
Sbjct: 200 GLGNFLESWQLSDTVFLVGEEEMDVPAHKVILQASGN-----FPLRSSDGDVIQLRGVSY 254
Query: 441 SALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEE 572
L LLQ++Y G + + ELA + + +V L Q EE
Sbjct: 255 PILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQCEE 297
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 42.7 bits (96), Expect = 6e-04
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 303 DVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMN-PTQHPIVFLKD-VSHSALRDLLQFMYQ 476
DV +GR ++AH+++LS SP+F++ F + + F K+ +S+ AL L+ F Y
Sbjct: 174 DVMFYVQGRPIEAHRVILSARSPFFKQKFENEWKDRREVRFSKEKLSYPALCSLIHFFYS 233
Query: 477 GEVNVKQEELASFISTAEQLQVKGL 551
+ + +++ + + + + L
Sbjct: 234 DRLEISVDDMEDLVRICKVCKCESL 258
>At5g19330.1 68418.m02303 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 710
Score = 41.5 bits (93), Expect = 0.001
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +3
Query: 282 LSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMNPTQHPI--VFLKDVSHSALRD 455
++ L DVT EGR AH++ L S F+ MF + + + ++
Sbjct: 535 VNNATLSDVTFLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFEL 594
Query: 456 LLQFMYQGEVNVKQEELASFISTAEQLQVKGL 551
+++F+Y G V++ E + A+Q ++GL
Sbjct: 595 MMRFIYTGSVDITNEISKDLLRAADQYLLEGL 626
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 41.5 bits (93), Expect = 0.001
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 252 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMNPTQ-HPIVFLK 428
+ + + F LL DVT G QAHKLVL+ S +F+ MF + + V +
Sbjct: 189 SELGSHFGKLLDTLQGSDVTFDVAGEKFQAHKLVLAARSQFFRSMFYNTLAENNSDVVIS 248
Query: 429 DVSHSALRDLLQFMYQGEVNVKQEELAS 512
D+ + LL FMY+ + E L +
Sbjct: 249 DLEPKVFKALLHFMYKDSLPGDVEPLTA 276
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 41.1 bits (92), Expect = 0.002
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMN-PTQHPIVFLK 428
+ + + F LL + D+T G AHKLVL+ SP+F+ F + V +
Sbjct: 182 SELGSHFGVLLDSMEGSDITFNIAGEKFLAHKLVLAARSPFFKSKFFSEFEANNTEVTIN 241
Query: 429 DVSHSALRDLLQFMYQ 476
D+ + LLQFMY+
Sbjct: 242 DLEPKVFKALLQFMYK 257
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 40.7 bits (91), Expect = 0.003
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 NMSAGFHGLLSRGDLV-DVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMNPTQHPIVFLKD 431
++S F LL G DVT + EGRL+ AH+ +L+ S +F++ F + P+ +
Sbjct: 10 SLSLDFLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGTDSPQPVTGIDP 69
Query: 432 VSHSAL 449
H ++
Sbjct: 70 TQHGSV 75
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 40.3 bits (90), Expect = 0.003
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +3
Query: 270 FHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ-EMFX-MNPTQHPIVFLKDVSHS 443
F LL G DVT +G AHKLVL+ S F+ ++F + + ++DV
Sbjct: 192 FGKLLESGKGADVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAP 251
Query: 444 ALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGL 551
+ LL F+Y E+ Q+ + + + A L + L
Sbjct: 252 IFKMLLHFIYWDEMPDMQDLIGTDLKWASTLVAQHL 287
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 39.5 bits (88), Expect = 0.006
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 333 LQAHKLVLSVCSPYFQEMFX--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 506
+ AHK VL SP F+ M M + + + DVS+ ALR + ++Y E + ++
Sbjct: 80 IPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMA 139
Query: 507 ASFISTAEQLQVKGL 551
+ +E+ QVK L
Sbjct: 140 CDLLVMSEKYQVKHL 154
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 37.9 bits (84), Expect = 0.018
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 303 DVTLAAEGRLLQAHKLVLSVCSPYFQEMF--XMNPTQHPIVFLKDVSHSALRDLLQFMYQ 476
DVT +G+ AHK+ L S F+ MF V + ++ +++F+Y
Sbjct: 541 DVTFLIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYS 600
Query: 477 GEVNVKQEELASFISTAEQLQVKGL 551
G +N+ + + A+Q ++GL
Sbjct: 601 GRINIAKHLAKDLLVAADQYLLEGL 625
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 37.1 bits (82), Expect = 0.031
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Frame = +3
Query: 255 NMSAGFHGLLSRGDLV-DVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMNPTQHP------ 413
+MS + LL G DVT + EGRL+ AH+ +L+ S +F++ F + P
Sbjct: 11 SMSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCESDPSQPGAEPAN 70
Query: 414 -------------IVFLKDVSHSALRDLLQFMYQGEVNV 491
++ + V + LLQF+Y G+V++
Sbjct: 71 QTGSGARAAAVGGVIPVNSVGYEVFLLLLQFLYSGQVSI 109
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.031
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 333 LQAHKLVLSVCSPYFQEMFXMNPTQ---HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 503
+ HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 504 LASFISTAEQLQVKGL 551
S A++ + L
Sbjct: 97 YRSLYLAADKYDISYL 112
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 37.1 bits (82), Expect = 0.031
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 333 LQAHKLVLSVCSPYFQEMFXMNPTQ---HPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 503
+ HK VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 504 LASFISTAEQLQVKGL 551
S A++ + L
Sbjct: 97 YRSLYLAADKYDISYL 112
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 36.3 bits (80), Expect = 0.054
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ-EMFXMNPTQHPIVFLK 428
+++ + F LL D D+T G +AH+LVL+ SP F+ E + + + +
Sbjct: 200 SDIGSHFGMLLENEDGSDITFNVSGEKFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVT 259
Query: 429 DVSHSALRDLLQFMYQ 476
D+ + LL ++Y+
Sbjct: 260 DMEPKVFKALLHYIYK 275
>At5g48510.1 68418.m05998 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 224
Score = 35.1 bits (77), Expect = 0.12
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Frame = +3
Query: 255 NMSAGFHGLLSRGDLVDVTLAA----EGRLLQAHKLVLSVCSPYFQEMFXMN----PTQH 410
+ S G +L+ VDV L A EG + AHKL+L+ S F+ MF ++ T+H
Sbjct: 9 HFSGGLAKVLAEKWQVDVMLKAKNSDEGSAISAHKLILASRSEVFKNMFELDEFKTSTKH 68
Query: 411 -PIVFLKDVSHSALRDLLQFMYQG----EVNVKQEELASFIS 521
+ L ++ H L ++F+ NVKQ + +++
Sbjct: 69 VETITLSEMKHEELEAFVEFICSDGSMLSANVKQHARSLYLA 110
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 34.3 bits (75), Expect = 0.22
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +3
Query: 252 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFX--MNPTQHPIVFL 425
+NM G LL D+ +AHKL+L+ SP F+ F + + +
Sbjct: 178 SNMGQGLKDLLDSEVGCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVI 237
Query: 426 KDVSHSALRDLLQFMY 473
D+ S + +L F+Y
Sbjct: 238 DDIEPSIFKAMLSFIY 253
>At2g40440.1 68415.m04990 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain;
Length = 194
Score = 33.9 bits (74), Expect = 0.29
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +3
Query: 267 GFHGLLSRGDLVDVTLAA-----EGRLLQAHKLVLSVCSPYFQEMFXMN----PTQHPIV 419
GF +L VDV L A EG AHKLVLS S F++M + Q +
Sbjct: 13 GFAKILKEQRQVDVRLKAGDSGDEGASTSAHKLVLSARSEVFKKMLESDEIKASAQLETI 72
Query: 420 FLKDVSHSALRDLLQFMY 473
L ++ H L ++F+Y
Sbjct: 73 TLCEMKHEELEAFIEFIY 90
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 32.3 bits (70), Expect = 0.88
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 252 ANMSAGFHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYF 377
+N+ LL G DV +G AHKLVL+ SP F
Sbjct: 187 SNLGQQLGNLLESGKGCDVVFQVDGETFNAHKLVLATRSPVF 228
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 31.9 bits (69), Expect = 1.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 420 ILLDAELGSX*TFLENKVNILIKLIYVPVTICLRQPMLRLLNLHATAGHES 268
+LL G FLE V L+K+ +P R+ M +L +HAT H+S
Sbjct: 841 LLLPVLPGRMFDFLEAPVPFLVKICNMPALPQCRELMAQLAPIHATLAHQS 891
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 30.7 bits (66), Expect = 2.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 270 FHGLLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQ 380
F LL G DVT +G AHKLVL+ S F+
Sbjct: 192 FGKLLESGKGADVTFEVDGETFPAHKLVLAARSAVFR 228
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 30.3 bits (65), Expect = 3.6
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 279 LLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFXMNPTQHPI--VFLKDVSHSALR 452
+L+ D+T+ A + AH+ VL+ SP F+ MF + + + + + D+ A +
Sbjct: 157 MLTESIYTDITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINVLDMPLDACQ 216
Query: 453 DLLQFMY 473
L ++Y
Sbjct: 217 AFLSYIY 223
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 137 IKCF*YWNYRVQSLG*GSHSRRHHGVGRTIL 229
++CF +WNY ++RRHHG R IL
Sbjct: 315 LQCFDFWNYV------NMNTRRHHGAARIIL 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,575,850
Number of Sequences: 28952
Number of extensions: 469993
Number of successful extensions: 933
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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