Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D03_e20_07.seq
         (1475 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22CN6 Cluster: Protein kinase domain containing protei...    37   1.5  
UniRef50_Q5FC98 Cluster: NADH-quinone oxidoreductase chain L; n=...    36   2.7  

>UniRef50_Q22CN6 Cluster: Protein kinase domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
           domain containing protein - Tetrahymena thermophila
           SB210
          Length = 710

 Score = 36.7 bits (81), Expect = 1.5
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -3

Query: 267 HDIDCQIRKFNELKENDCYMTDRD-PAKNSQLY*TTTNSTAFKHPRT 130
           H   C I+KFN+LK+N+ Y+ + +  ++NS  Y    N TA K+ +T
Sbjct: 222 HKTSCDIQKFNQLKKNNNYIQNIECKSQNSSSYVNKKNITATKNNKT 268


>UniRef50_Q5FC98 Cluster: NADH-quinone oxidoreductase chain L; n=12;
           Rickettsiales|Rep: NADH-quinone oxidoreductase chain L -
           Ehrlichia ruminantium (strain Welgevonden)
          Length = 641

 Score = 35.9 bits (79), Expect = 2.7
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 735 AYMKYYINVLTFISLR*LKNXQLTRXYLEHFYYYNNKPPLRLLS 604
           AY++YY N  TF     L      + Y++  YYY    P++L++
Sbjct: 534 AYLRYYFNYFTFFKFHRLTEFLYKKWYIDELYYYVFVIPIKLIA 577


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,026,770,083
Number of Sequences: 1657284
Number of extensions: 17150885
Number of successful extensions: 27550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27537
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 156069156825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)