Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D03_e20_07.seq
         (1475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   8.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   8.7  

>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   YVRKELRIDRFLKLIICTCEFNIVRIYNMHR 95
           Y RK  RI R +  I   CE   V+IYN+ R
Sbjct: 17  YRRKTARIRRKVSEIEKECEMYAVKIYNVER 47


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 297 TISHKAPPRLHDI--DCQIRKFNELKENDCYMTDRDPAKNSQLY*TTTNSTAFKHP 136
           ++ H  PP   +I  D + +K  ELK    ++ + DP K ++       S+A K P
Sbjct: 157 SLQHALPPEHRNIWFDMEKQKKEELKNKHSWLYNEDPFKAAKELQAARASSAAKPP 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,273,581
Number of Sequences: 5004
Number of extensions: 74915
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 822602210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)