Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D02_e12_08.seq
         (1515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      134   2e-31
08_02_1181 - 24985963-24986242,24987109-24987197                      132   7e-31
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    111   1e-24
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226     32   1.0  
03_02_0076 - 5451137-5452503,5453439-5453866,5453949-5454046,545...    31   2.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.2  
07_01_0222 - 1638965-1640965                                           29   9.6  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  134 bits (324), Expect = 2e-31
 Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
 Frame = +2

Query: 113 KEXRKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTR 292
           K+ R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIR+FA+K MGT DVRVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 293 LNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 460
           LNK++WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  132 bits (319), Expect = 7e-31
 Identities = 64/117 (54%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
 Frame = +2

Query: 116 EXRKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRL 295
           E + G +   EVVTREYT+NLHKRLH   FKK+AP AIKEIR+FA+K MGT DVRVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 296 NKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 460
           NK++WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  111 bits (267), Expect = 1e-24
 Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 18/124 (14%)
 Frame = +2

Query: 143 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRRFAEKQMGTPD 274
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIR+FA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 275 VRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQT 448
           +R+D +LNK +W+ G+R+VP           ND+ED+  +L++LVT   +P   +KGL T
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132

Query: 449 ENVD 460
           + V+
Sbjct: 133 KVVE 136


>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
          Length = 568

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 367 ASAR*SYTNTEWNIPDSF*PKIFV*AGIYSYVWSTHLFFSESPDLLDSTGCTLLETNTV 191
           A+A     N  W +P  F       A ++ Y+     FF E+PD + ST CT L   T+
Sbjct: 446 AAASGEAINIAWQMPQYF---FLAGAEVFCYIAQLEFFFGEAPDTMKST-CTSLALLTI 500


>03_02_0076 -
           5451137-5452503,5453439-5453866,5453949-5454046,
           5454723-5454836,5455017-5455111,5455222-5455283,
           5455398-5455557,5456247-5456643
          Length = 906

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 675 PHRSPFPTXAAX*IGEWEICKRYXLLKIRV 764
           PHR+P  T A   +GE E+C+R  ++  R+
Sbjct: 157 PHRAPKGTVAGLVVGELELCRRVFMVLYRI 186


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 556 ITIHWPSFYNVV-TGKTLALPNLIALQH 636
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_01_0222 - 1638965-1640965
          Length = 666

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 431 WRQRAHXLQG*TVCVLSLHHHCVCEIVLH 345
           W +R H ++G   C+L LH  C   +V+H
Sbjct: 442 WNKRFHIIKGVASCLLYLHEECE-SVVIH 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,766,643
Number of Sequences: 37544
Number of extensions: 468763
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)