Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D02_e12_08.seq
         (1515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   128   9e-30
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)           127   2e-29
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           126   5e-29

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  128 bits (309), Expect = 9e-30
 Identities = 61/115 (53%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
 Frame = +2

Query: 122 RKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNK 301
           +KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIR+FAEK+MGT DVRVD +LNK
Sbjct: 4   KKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNK 61

Query: 302 YLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 460
            +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 62  QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score =  127 bits (307), Expect = 2e-29
 Identities = 61/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
 Frame = +2

Query: 125 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNKY 304
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIR+FA K MGT DVRVD +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 305 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 469
           +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 63  IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  126 bits (303), Expect = 5e-29
 Identities = 60/115 (52%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
 Frame = +2

Query: 122 RKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRRFAEKQMGTPDVRVDTRLNK 301
           +KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIR+FAEK MGT DVRVD +LNK
Sbjct: 4   KKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 61

Query: 302 YLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 460
            +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 62  QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,569,108
Number of Sequences: 28952
Number of extensions: 348629
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4048208640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)