Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D01_e4_07.seq
(1564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 35 0.027
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.75
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.75
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 30 1.00
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 29 2.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 2.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 28 3.0
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 27 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 5.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 9.3
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 35.1 bits (77), Expect = 0.027
Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 3/171 (1%)
Frame = +1
Query: 109 QNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGIYEHELQ---DARKLL 279
+ L+ RL K++ ES++S L +++ QE E+SN+K + Q + L
Sbjct: 923 EELHIRLDKLTGKLKIEESKSSDLGKKLTARQE----EISNLKEENMSQSQAITSVKSKL 978
Query: 280 DDTSREKAKLEIDLKRLYXENXXXXXXXXXXXXXCQQAENLARHYETRFTEESNKYNTAL 459
D+T + +KLE D++ L + ++ + ++ +
Sbjct: 979 DETLSKSSKLEADIEHLKNKVSEVEVERNALLASNERLMDDLKNNGENIASLQTEIEKKR 1038
Query: 460 ADKKKAQDEARDLAKELEKLRKVYADTRXTLEEEMLCRIXMENTVXSLREE 612
A+ Q + ++ E E L + + T +LE++ +E V L +E
Sbjct: 1039 AENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDE 1089
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 30.3 bits (65), Expect = 0.75
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 424 FTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRXTLE 555
+ E++N +N ADKKK + + +DL +E + + + R L+
Sbjct: 235 YREKTNVFNQLRADKKKLKKDLKDLVEEFQPILDKGEELRSDLK 278
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 30.3 bits (65), Expect = 0.75
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +1
Query: 100 DALQNLND-----RLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGIYEHELQD 264
D L +ND + + +++R LE+ ++RE + + + SN + YE+E++
Sbjct: 230 DYLSKVNDVEQSQNVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQ 289
Query: 265 ARKLLDDTSRE 297
+ LD+ S E
Sbjct: 290 LQNRLDELSEE 300
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 1.00
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 512 RNYVKCMXTRGXRWKRRCFAASXW 583
RNY+ + ++ RWKR C S W
Sbjct: 15 RNYIPVVNSQNTRWKRLCGTQSVW 38
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.7 bits (61), Expect = 2.3
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 9/178 (5%)
Frame = +1
Query: 106 LQNLNDRLAAYIDKVRQLESENSGLRREIQTTQEVVTREVSNIKGIYEHELQDARKLLDD 285
LQ +++ L + + + + GL+ +++ ++V T + + + LL
Sbjct: 1153 LQEIHENLLLKVSDLENYKKKYEGLQLDLEGLKDVDTN-FQELSKKHRDLTFNHESLLRQ 1211
Query: 286 TSREKAKLEI---DLKRLYXENXXXXXXXXXXXXXCQQAENLARHYETRFTEESNKYNTA 456
++ K KL + + K L + + L R E S T
Sbjct: 1212 SASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYSQLGKTF 1271
Query: 457 LADKKKA------QDEARDLAKELEKLRKVYADTRXTLEEEMLCRIXMENTVXSLREE 612
+K+KA +E R L ELE RK+ + + LEE R + + V LR +
Sbjct: 1272 EDEKRKALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVKTTR-SLRSEVTLLRNK 1328
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 406 RHYETRFTEESNKYNTALADKKK 474
+ YE + E+SN YNT L K+K
Sbjct: 1694 KEYEVLYVEKSNDYNTLLLQKEK 1716
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 388 QAENLARHYETRFTEESNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRXTLEE 558
QA N + + RF+ + YN+ L K Q + R + ++ +++A+ LEE
Sbjct: 351 QAINFVNNVKNRFSHKPEAYNSFLDILKSYQHDQRPIQLVYFQVSQLFAEAPDLLEE 407
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Frame = +1
Query: 109 QNLNDRLAAYIDKVRQLES---ENSGLRREIQ--TTQEVVTREV--SNIKGIYEHELQDA 267
QNL L+ Y++ +++LE+ EN+ + E++ + +++ + +K +E +
Sbjct: 9 QNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNV 68
Query: 268 RKLLDDTSREKAKLEIDLK 324
+ LD ++E A+LE K
Sbjct: 69 KTRLDFINKEIARLENQTK 87
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 127 LAAYIDKV-RQLESENSGLRREIQTTQEVVTREVSNIKGIYEHELQDARKL 276
++A +D V R +ESE+ ++ TRE+S I + EH+L+ A K+
Sbjct: 1445 ISASLDDVERSIESEDFQSVGDVNVKVNRNTREISFIYNVDEHKLEMAIKI 1495
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 436 SNKYNTALADKKKAQDEARDLAKELEKLRKVYADTRXTLEEEMLCRIXMENTVXSL 603
+ +++ D K + +++ ++LEK ++A L EE + +EN+ L
Sbjct: 1599 NEEHSIVYEDAKLMEKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLENSEAEL 1654
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,418
Number of Sequences: 5004
Number of extensions: 40256
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 880085256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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