Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C12_e91_06.seq
         (1500 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    43   2e-05
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    38   8e-04
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    37   0.002
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.80 
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          27   1.9  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    26   2.5  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   9.9  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 31/165 (18%), Positives = 75/165 (45%)
 Frame = +2

Query: 140  MDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQT 319
            ++ + KK++ ++     A +    C  + KD  L+A+ A+ +  + ++++++ E DL ++
Sbjct: 743  IEELNKKIETLQKTIVEARETQTQCSAKVKD--LQAKIADGKGHR-ERELKSAEEDLKRS 799

Query: 320  QEGLMQVNAKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAA 499
            ++   +     ++ E+  +  + E+  L + I              A    +L E S   
Sbjct: 800  KKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKLEEQIAALQQRLVEVSGTT 859

Query: 500  DESERARKILENRSLADEERMDALENQLKEARFLAEEADKKYDEV 634
            DE   A   L+ +    +E+M++   +LK      ++  K+ DE+
Sbjct: 860  DEMTAAVTALKQQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDEL 904



 Score = 27.9 bits (59), Expect = 0.80
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +2

Query: 248  EKAEEEARQLQKKIQTIENDLDQTQEGLMQVNAKLEEKEKALQNAESEV 394
            E+ EE+ +++ ++ + +E+D  + Q  +  ++   EEK+K L+ A SEV
Sbjct: 990  EREEEQYKEVMRRKKVVEDDKKKIQAIITDLD---EEKKKKLKVAWSEV 1035



 Score = 26.2 bits (55), Expect = 2.5
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = +2

Query: 155  KKMQAMKLEKDNALDRAAMC-----EQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQT 319
            KK+Q  K +    +++ AM      E+Q K+   R +  E++    +KKIQ I  DLD+ 
Sbjct: 968  KKLQDSKDKMSRNVNQKAMVLLEREEEQYKEVMRRKKVVEDD----KKKIQAIITDLDEE 1023

Query: 320  QEGLMQV 340
            ++  ++V
Sbjct: 1024 KKKKLKV 1030


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 4/144 (2%)
 Frame = +2

Query: 155  KKMQAMKLEKDNALDRAA--MCEQQAKDANLRAEKAEEEA--RQLQKKIQTIENDLDQTQ 322
            KK+Q   L  +  L + A  + E + ++  LR E         +LQK I+  +  LDQ +
Sbjct: 754  KKLQQELLTNEQQLQQLAGVVFEGETEETTLREELEHSRTILAKLQKGIEEEQAKLDQVR 813

Query: 323  EGLMQVNAKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAAD 502
              + Q     + K+ A+   E+E+A +   I                    L  ++++ +
Sbjct: 814  RTVQQEEQTAQAKKDAMGAVEAEIARIQASIDKEQQARHDLQTNHKVKQQALKRSTESME 873

Query: 503  ESERARKILENRSLADEERMDALE 574
            E +R R  L   +  ++ R +A E
Sbjct: 874  ERKRTRVALS--AALEQARQEASE 895


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 37/170 (21%), Positives = 66/170 (38%)
 Frame = +2

Query: 152  KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQTQEGL 331
            +++ Q +  E D   ++    E   K+   R  +  E+ R LQ+++   +    QT+  +
Sbjct: 618  RQEHQRLVRECDKIRNQRGQIENSIKELQERCAELREQKRDLQEQLSKYQ----QTKMKV 673

Query: 332  MQVNAKLEEKEKALQNAESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESE 511
             +   K +E    L N + E     R  +               A  + A AS+  D  E
Sbjct: 674  KRQEQKCKELTARLVNVDEEKVKFERSCRTIIEQLLDQQRRKVAALERYAAASREHDLLE 733

Query: 512  RARKILENRSLADEERMDALENQLKEARFLAEEADKKYDEVARKLAMVXA 661
            +  ++ E R+   E     LE+  + A+       K    V +KLA V A
Sbjct: 734  QRIRLFEERNNDREANFRLLEDAYQSAK-------KTLANVEKKLAEVKA 776


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 7/131 (5%)
 Frame = +2

Query: 218  QQAKDANLRAEKAEEEARQLQKKIQTIENDLDQTQEGLMQVNAKLEEKEKALQNA----- 382
            Q++KD   +    E+E    Q  I+   ++  Q +E   ++  +LEE + A++ A     
Sbjct: 931  QKSKD---KINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKAHEGSS 987

Query: 383  --ESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESERARKILENRSLADEE 556
              + E+ AL +R                T   KL E        +   K L+   + +E 
Sbjct: 988  SIKKEIVALQKREAEGKMKRLEFEQILQTIETKLQETKDTLPHWQLQLKPLKLHEIPEEP 1047

Query: 557  RMDALENQLKE 589
              + L+   +E
Sbjct: 1048 PQEPLKEYTEE 1058



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/61 (19%), Positives = 35/61 (57%)
 Frame = +2

Query: 149  IKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQTQEG 328
            ++++++ MKL  + A + ++  +++      R  + + +  + ++ +QTIE  L +T++ 
Sbjct: 968  LREELEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRLEFEQILQTIETKLQETKDT 1027

Query: 329  L 331
            L
Sbjct: 1028 L 1028


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 203 AAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQTQEGLMQVNAKLEEKEKAL 373
           AA  E+Q   A    ++ +E  + LQK++  + +  +     L+  N  + E ++AL
Sbjct: 116 AATLEEQLHAAQQETQQEQEMKKALQKQLDALTDSRNALYIDLLLANIAIGETKQAL 172


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +2

Query: 503 ESERARKILENRSLADEERMDALE-------NQLKEARFLAEEADKKYDEV 634
           + E   +  E  + ADEE  D  E       ++L+EAR +AEE +++  E+
Sbjct: 76  DEEHLEEEQEEEAEADEEEADESESEESEESDELEEARLVAEELEERQQEL 126


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 200 RAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENDLDQT--QEGL 331
           R+   +QQ +    + ++ +++ +Q Q+KI+  + DL +   QEGL
Sbjct: 190 RSLQQQQQQQQQQQQQQQEQQQQQQQQRKIRRPKADLIEVVPQEGL 235


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 918,854
Number of Sequences: 2352
Number of extensions: 15910
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175562640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)