Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C12_e91_06.seq
         (1500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    24   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   9.0  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 653 PWRVYEQPHHISCLLPRXETWLPSA 579
           P+ V + PHH+S  +P  ++ + SA
Sbjct: 4   PYHVAQLPHHLSPNMPTMDSTVSSA 28


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 400 PQPTHPTAGGGPREVRGASRHCHS 471
           P P H T G G   +     H HS
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHS 435


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 587 PSAGSPGRPCAPHR-PTTCSXGSCGHVRTHRRPG*P 483
           PS+G+PG   +PH+ P     GS  +      PG P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,070
Number of Sequences: 438
Number of extensions: 4466
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52395750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)