Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_C10_e75_06.seq
(1560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-06
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 36 0.088
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 35 0.20
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16) 34 0.27
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 33 0.47
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13) 31 2.5
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09) 30 4.4
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06) 29 7.6
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 52.0 bits (119), Expect = 1e-06
Identities = 28/120 (23%), Positives = 62/120 (51%)
Frame = +2
Query: 59 LQVIRHEATFHAIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTE 238
LQ++ + F ++++ + + ++Y L +R++ G I+ ++ CL+V+Q L+ +
Sbjct: 828 LQILTY--VFTGLSLLAEVALLLLYLWLKELRNVPGKILMSLVFCLLVNQVFFLMLGLNQ 885
Query: 239 FSNHVSFMITDIILYISLLAAFFWLNSFGFYIWKTFKSRNVFLRVTDVRKYXYYSCIXWS 418
S + +I++ LLAAF W++ + + KTF S+ V + + Y C ++
Sbjct: 886 ISGFC--VAVAVIVHYFLLAAFAWMSVMAYDVMKTFASKAVLQASNSRKTFIKYCCAAFT 943
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 35.9 bits (79), Expect = 0.088
Identities = 17/84 (20%), Positives = 42/84 (50%)
Frame = +2
Query: 95 IAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFMITDI 274
+++ L+V + Y + +R G + +++ ++++Q LV + + + I
Sbjct: 675 LSVACLLVVVVTYSLFSELRTAPGVNLLNLSISILLAQFLFLVGS-GQTGSKAGCVFIAI 733
Query: 275 ILYISLLAAFFWLNSFGFYIWKTF 346
+L+ + LA+F W++ F W+ F
Sbjct: 734 VLHYAFLASFSWMSIIAFDTWRAF 757
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 34.7 bits (76), Expect = 0.20
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +2
Query: 80 ATFHAIAMILYLIVAII----YFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSN 247
AT + M+L ++ + YF+ +R G + + + ++++Q L I +
Sbjct: 746 ATLTLVCMVLSIVALVFFLVTYFLFRQLRTTPGVNLMNLALSILLAQVTWLAGI-NQTDQ 804
Query: 248 HVSFMITDIILYISLLAAFFWLNSFGFYIWKTFKSRNVF 364
++ + ++ L +F W + F W+ F S+ F
Sbjct: 805 PITCTVVAALIQFFYLVSFMWTSIIAFDTWRAFSSKTHF 843
>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
Length = 736
Score = 34.3 bits (75), Expect = 0.27
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 92 AIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFMITD 271
+IA ++++++ YF+ +R G + +++ L+++Q L + + I
Sbjct: 465 SIASLVFMLMT--YFLFNELRTHPGIHLMNLSIALLMAQLMWLTLLNQTHYPKLCTAIAV 522
Query: 272 IILYISLLAAFFWLNSFGFYIWKTFKSRNVFLRVTDVRKYXYYSC-IXW 415
+ Y+ LAAF W++ F WK F NVF V C + W
Sbjct: 523 ALQYL-YLAAFTWISVISFSTWKAF---NVFAVAKPVLSQLICRCAVGW 567
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 33.5 bits (73), Expect = 0.47
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +2
Query: 104 ILYLIVAIIYF-VLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFMITDIIL 280
I +L+V ++ F + +R L G + + L+ + L + +H + I I L
Sbjct: 1051 ISFLLVFLVTFSIFQELRTLPGIHVMNLATSLLAAHMLWLAGS-GQTEDHSACQIIAIAL 1109
Query: 281 YISLLAAFFWLNSFGFYIWKTFKSR 355
+ S L++F W++ F W+ F +
Sbjct: 1110 HYSFLSSFTWMSVIAFDTWRAFSRK 1134
>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 32.3 bits (70), Expect = 1.1
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +2
Query: 92 AIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFMIT- 268
A++ + L++ +Y + +R++ G + + L+ Q + + ++N I
Sbjct: 476 ALSAVTELVLLGVYCRVKEMRNIPGKNLMSFLAALLGYQ---IFYVLIGYNNIRELCIAV 532
Query: 269 DIILYISLLAAFFWLNSFGFYIWKTFKSRNVFLRVTDVRKYXYYSCIXW 415
I+++ LA+F W+ + + KTF S+ V R ++ YS W
Sbjct: 533 AIVIHYFFLASFGWMAVMAYDVMKTFTSKGV--RSCSNNRFLKYSGFAW 579
>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
Length = 1052
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/88 (20%), Positives = 39/88 (44%)
Frame = +2
Query: 95 IAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFMITDI 274
I++I V + Y + +R G + ++ +++SQ L + + + + I
Sbjct: 764 ISVIALGFVLVTYSLFSELRTTPGKNLMNLSTAILLSQIFWLSGS-GQVHDRTACTVVAI 822
Query: 275 ILYISLLAAFFWLNSFGFYIWKTFKSRN 358
+L+ LA+F W + W+ F R+
Sbjct: 823 LLHYFFLASFIWTAIIAWDTWRAFSHRS 850
>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
Length = 712
Score = 30.3 bits (65), Expect = 4.4
Identities = 22/101 (21%), Positives = 46/101 (45%)
Frame = +2
Query: 59 LQVIRHEATFHAIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTE 238
LQ+I + A++ + +++ +Y + +R++ G + + LI+ Q I +
Sbjct: 428 LQIITYVGL--AVSFVSEVLLLAVYAEMKQLRNVPGLNLMSFVTALIMYQVI-YQTIGLD 484
Query: 239 FSNHVSFMITDIILYISLLAAFFWLNSFGFYIWKTFKSRNV 361
+ +I + Y LLAAF W + KTF + ++
Sbjct: 485 VKEEICIVIATTLHYF-LLAAFAWTGIMAYDTKKTFSTESI 524
>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
Length = 1003
Score = 29.5 bits (63), Expect = 7.6
Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Frame = +2
Query: 5 GXTRVCGG---RSRN*WXP-PGLQVIRHEATFHAIAMILYLIVAIIYFVLPTIRDLAGNI 172
G T VC R W P L + +IA +++ +V Y + +R + G
Sbjct: 809 GTTYVCTDLPPRREKTWADDPALSWLTLMCMLLSIAGLVFFLVT--YLLFSELRTIPGVN 866
Query: 173 ITTINVCLIVSQAADLVRIFTEFSNHVSFMITDIILYISLLAAFFWLNSFGFYIWKTFKS 352
+ + + +++Q L + + ++ + +L L +F W + + W+ F S
Sbjct: 867 LMNLALSTLLAQVTWLTGV-NQTDTPITCTVVAALLQYFYLVSFTWTSIIAYDTWRAFSS 925
Query: 353 RN 358
++
Sbjct: 926 KS 927
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,651,868
Number of Sequences: 59808
Number of extensions: 372497
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5094195218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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