Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C10_e75_06.seq
         (1560 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027721-1|AAH27721.1|  378|Homo sapiens SLC38A5 protein protein.      34   1.6  
BC019246-1|AAH19246.1|  472|Homo sapiens solute carrier family 3...    34   1.6  
AF276889-1|AAK61856.1|  472|Homo sapiens amino acid transport sy...    33   3.7  

>BC027721-1|AAH27721.1|  378|Homo sapiens SLC38A5 protein protein.
          Length = 378

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
 Frame = +2

Query: 92  AIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLI-VSQAADLVRIF-TEFSNHVSFMI 265
           AIA+IL ++V ++   +PTIRD+ G I +T    LI +  +   +RI  +E    +S+  
Sbjct: 284 AIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPFLSWPK 343

Query: 266 TDIILYISLLAAFFWLNSFGFYI--WKTFKSR 355
              + +  +L   F   S GF    W T +SR
Sbjct: 344 IQALCF-GVLGVLFMAVSLGFMFANWATGQSR 374


>BC019246-1|AAH19246.1|  472|Homo sapiens solute carrier family 38,
           member 5 protein.
          Length = 472

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
 Frame = +2

Query: 92  AIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLI-VSQAADLVRIF-TEFSNHVSFMI 265
           AIA+IL ++V ++   +PTIRD+ G I +T    LI +  +   +RI  +E    +S+  
Sbjct: 378 AIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPFLSWPK 437

Query: 266 TDIILYISLLAAFFWLNSFGFYI--WKTFKSR 355
              + +  +L   F   S GF    W T +SR
Sbjct: 438 IQALCF-GVLGVLFMAVSLGFMFANWATGQSR 468


>AF276889-1|AAK61856.1|  472|Homo sapiens amino acid transport
           system N2 protein.
          Length = 472

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
 Frame = +2

Query: 92  AIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLI-VSQAADLVRIF-TEFSNHVSFMI 265
           AIA+IL ++V ++   +PTIRD+ G I +T    LI +  +   +RI  +E    +S+  
Sbjct: 378 AIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIFYLRIVPSEVEPFLSWPK 437

Query: 266 TDIILYISLLAAFFWLN-SFGFYIWKTFKSR 355
              + +  L   F  ++ SF F  W T +SR
Sbjct: 438 IQALCFGVLGVLFTAVSLSFMFANWATSQSR 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,486,847
Number of Sequences: 237096
Number of extensions: 1789570
Number of successful extensions: 6185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6183
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23193116150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)