Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C10_e75_06.seq
         (1560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    31   2.2  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        31   2.2  
Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical p...    29   6.7  
Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    29   6.7  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical ...    29   6.7  

>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 55  RAAGNSARGYIPCNCNDIILNCCYN--IFCTTNNKRSGRKYNYNH 183
           RA  NSA   + CNCN     C ++  +F  + N+  G   N  H
Sbjct: 335 RATANSANSCVACNCNQHAKRCRFDAELFRLSGNRSGGVCLNCRH 379


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 55  RAAGNSARGYIPCNCNDIILNCCYN--IFCTTNNKRSGRKYNYNH 183
           RA  NSA   + CNCN     C ++  +F  + N+  G   N  H
Sbjct: 335 RATANSANSCVACNCNQHAKRCRFDAELFRLSGNRSGGVCLNCRH 379


>Z98866-22|CAE18019.1|  162|Caenorhabditis elegans Hypothetical
           protein Y49E10.27 protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 241 EFCEYSNQIRSLTNYQTHIYGCNYISCQISYCW*YKIYYSNN*V*YHCNCMEC 83
           E   YS ++  LT    H   C    C   +C+  K    +    YH +CMEC
Sbjct: 39  EVTAYSYKVGRLTMAMDHASLCTNNRCCRGFCFSIKRILKHYGECYHLDCMEC 91


>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +2

Query: 83  TFHAIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFM 262
           T HAI+MILYL  ++   +   I +  G     I++   +      +RIF   +   +F+
Sbjct: 146 TLHAISMILYLDKSLA-LIKCGIYNSVGKTFIYISIVFKI-MLDHFIRIFYISNLLYNFL 203

Query: 263 ITDII----LYISLLAAFFWLNSFGFYIWKTFKSRNV 361
           I+ +I    LYI  L + F L  F F  ++   S N+
Sbjct: 204 ISSVIQDRCLYIIQLCSTFLL-VFIFIFYRRHNSENI 239


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
 Frame = +2

Query: 83  TFHAIAMILYLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAADLVRIFTEFSNHVSFM 262
           T HAI+MILYL  ++   +   I +  G     I++   +      +RIF   +   +F+
Sbjct: 146 TLHAISMILYLDKSLA-LIKCGIYNSVGKTFIYISIVFKI-MLDHFIRIFYISNLLYNFL 203

Query: 263 ITDII----LYISLLAAFFWLNSFGFYIWKTFKSRNV 361
           I+ +I    LYI  L + F L  F F  ++   S N+
Sbjct: 204 ISSVIQDRCLYIIQLCSTFLL-VFIFIFYRRHNSENI 239


>AC199240-1|ABO33278.1|  427|Caenorhabditis elegans Hypothetical
           protein 2L52.1 protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 380 VRKYXYYSCIXWSC-VIXMTAMAIXTHFLLDTGTNPNRKMRTQFSSS 517
           VRK   + C+   C V+  ++  I TH  +    NP ++   +F SS
Sbjct: 91  VRKAKIFKCLIEDCPVVKSSSQEIETHLRISHPINPKKERLKEFKSS 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,940
Number of Sequences: 27780
Number of extensions: 288154
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4504441732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)