Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C10_e75_06.seq
         (1560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28190.1 68418.m03413 hypothetical protein                          33   0.51 
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    31   2.7  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   3.6  

>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 33.1 bits (72), Expect = 0.51
 Identities = 24/74 (32%), Positives = 38/74 (51%)
 Frame = +2

Query: 164 GNIITTINVCLIVSQAADLVRIFTEFSNHVSFMITDIILYISLLAAFFWLNSFGFYIWKT 343
           G ++T + +C+   +   +VR+ T   N VS  +T+        A  F LN +G  I  T
Sbjct: 308 GALLTMVALCV---ENILMVRLLTHEINDVSSAVTN--------AMSFLLNVYGAIITAT 356

Query: 344 FKSRNVFLRVTDVR 385
           F+ R +FL + DVR
Sbjct: 357 FERRGIFLLLFDVR 370


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +2

Query: 50  PPGLQVIRHEATFHAIAMIL-----YLIVAIIYFVLPTIRDLAGNIITTINVCLIVSQAA 214
           PP  Q  + E  +H ++++L     +L +   Y ++PT  D + ++     VC +V  A 
Sbjct: 238 PPDEQAEKEEGRYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGVVIGAM 297

Query: 215 DLVRIFT 235
            + ++F+
Sbjct: 298 AVAQLFS 304


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +2

Query: 335 WKTFKSRNVFLRVTDVRKYXYYSCIXWSCVIXMTAMAIXTHFLLD----TGTNP-NRKMR 499
           W   + RN  +R T+   Y +  C+ W C   + A  +  H L++    TG +  + +  
Sbjct: 204 WCIRRRRNCIVRETEKEMYTF-ECVRWKCKWSLRAARMEEHGLVEITKYTGPHTCSHEYP 262

Query: 500 TQFSSSILXDDAEQ 541
             F S    D+ E+
Sbjct: 263 NDFESEFAADEIER 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,057
Number of Sequences: 28952
Number of extensions: 260314
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)