Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C07_e51_05.seq
         (1562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 32/128 (25%), Positives = 36/128 (28%)
 Frame = +1

Query: 994  APRGSXPXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXX 1173
            AP    P  APP         S A  P   P        P    PP+  P     P    
Sbjct: 1130 APPVPVPSGAPPVPKP-----SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184

Query: 1174 XXXXPPXXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXPXXPXPXPPX 1353
                PP    S  PP P+    P +     P      P P   +G  P  P      PP 
Sbjct: 1185 AAGVPPVPPPSEAPPVPK----PSVGVPPVPPPSTAPPVPTPSAG-LPPVPVPTAKAPPV 1239

Query: 1354 XAGXXXXP 1377
             A     P
Sbjct: 1240 PAPSSEAP 1247



 Score = 29.9 bits (64), Expect = 1.00
 Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
 Frame = +3

Query: 1026 PXXGGXXPGXVRGXGAP-XPAXXPXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSPXP 1202
            P      P      GAP  PA    P +       P +       PP PA  G    P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 1203 XSXAPXPP 1226
               AP  P
Sbjct: 1127 SVAAPPVP 1134



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 33/156 (21%), Positives = 39/156 (25%)
 Frame = +1

Query: 913  PXEXPXLXKAXGXTPXFEEAFXXXFXXAPRGSXPXXAPPXXGAXXRAXSGAGGPPXXPXX 1092
            P   P +    G  P  + +        P  + P    P         S A  P   P  
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138

Query: 1093 XXRXLLPXXXXPPLFXPGGEXXPRAXXXXXXPPXXNXSRXPPXPRXXLXPXLXAXXGPLX 1272
                  P    PP+  P G            P     S  PP P+    P       P  
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK----PAAGVPPVPPP 1194

Query: 1273 XLRSPXPXXGSGXXPXXPXXPXPXPPXXAGXXXXPP 1380
                P P    G  P  P  P   PP        PP
Sbjct: 1195 SEAPPVPKPSVGVPPVPP--PSTAPPVPTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,805,322
Number of Sequences: 5004
Number of extensions: 57593
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 880085256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)