Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C07_e51_05.seq
         (1562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   35   0.20 
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.4  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)                      30   4.4  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
 Frame = +3

Query: 1047 PGXVRGXGAPXPAX-XPXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSPXPXSXAPXP 1223
            P   RG   P P+   P P  +     PP     G   PP P        P P   AP P
Sbjct: 289  PPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPP 348

Query: 1224 PXL 1232
            P +
Sbjct: 349  PSM 351


>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 26/121 (21%), Positives = 27/121 (22%)
 Frame = -1

Query: 1385 RSGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXR 1206
            RS G        GG G    G  G         G     +G       G     G GG  
Sbjct: 236  RSNGRLGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGATGGGGGA 295

Query: 1205 XWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXG 1026
                 G       A G         GG    G        G  GG          A   G
Sbjct: 296  TGGGGGATGGGGGATGVGGGATGGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGG 355

Query: 1025 G 1023
            G
Sbjct: 356  G 356


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +3

Query: 1059 RGXGAPXPAXXPXPXLTXXXXXPPAIXSRGRGXPPX--PAXXGXXTSPXPXSXAPXPPXL 1232
            +  GAP P   P P        PP I SR  G  P   P   G  T P   S  P PP +
Sbjct: 772  KALGAPPPP--PPPTKPATPRVPPNIPSRPPGARPTPPPPPPGKPTKPTKPSLPPVPPGI 829


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
 Frame = +3

Query: 1047 PGXVRGXGAPXPAXX-----PXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSPXPXSX 1211
            PG  +G G P P        P P        PP    +G G PP  A  G    P     
Sbjct: 528  PGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQE 587

Query: 1212 APXPP 1226
             P PP
Sbjct: 588  GPPPP 592


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
 Frame = +3

Query: 1026 PXXGGXXPGXVRGXGAPXPAXXPXPXLTXXXXXPPAIXSR---GRGXPPXPAXXGXXTSP 1196
            P  GG  P      G   P+  P P        PP   S    G G PP P   G    P
Sbjct: 924  PPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPP 983

Query: 1197 XPXSXAPXPP 1226
             P    P PP
Sbjct: 984  PPPPPPPPPP 993


>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
          Length = 186

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 25/113 (22%), Positives = 26/113 (23%)
 Frame = -1

Query: 1349 GGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRXWXXXGGXXXXX 1170
            GG G    G  G       G G  +   G       G     G GG       G      
Sbjct: 44   GGHGGATGGGGGATGGGATGGGGGATGGG--GGATGGHGGATGGGGGATGDGGGATGGGG 101

Query: 1169 XARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXGGAXXG 1011
             A G         GG    G        G  GG          A   GG   G
Sbjct: 102  GATGGGGGATGGHGGATGGGVGATGGHGGATGGHGGATGGHGGATGGGGGATG 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,102,380
Number of Sequences: 59808
Number of extensions: 465949
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)