Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_C07_e51_05.seq
(1562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.078
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 36 0.078
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.18
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.18
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.18
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 34 0.31
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 31 1.7
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 31 2.2
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 2.2
AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical... 31 2.9
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 30 3.9
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 30 3.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 3.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 30 5.1
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 5.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 5.1
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 35.9 bits (79), Expect = 0.078
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 1/120 (0%)
Frame = -1
Query: 1379 GGXXXXPAXXGG-XGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRX 1203
GG P+ GG G G G G P G G G + G GG
Sbjct: 179 GGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGG----CGGGGSSGGGGYASAPSGGGG-- 232
Query: 1202 WXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXGG 1023
+ GG A G S G +SGG G GG + A GG
Sbjct: 233 YATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGG 292
Score = 31.1 bits (67), Expect = 2.2
Identities = 29/163 (17%), Positives = 41/163 (25%)
Frame = -1
Query: 1379 GGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRXW 1200
GG G G G P P P G + GG
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPP---PPPPPPAPAPVSSGGGYSEQSSGGGGGS 334
Query: 1199 XXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXGGA 1020
GG + G S G +S S GG + + + GG
Sbjct: 335 SYSGGGEASSSSGGGYSGGGESSSSGGSSYSSGGDSSSSSGGGYSSGGDSSSSSSSSGGY 394
Query: 1019 XXGFEPRGAXXKXXXXASSXQGVXPXAFXKXGNSXGNFFAAXS 891
G + + SS G + +S G + + S
Sbjct: 395 SGGSDSSSSSSSSSGGYSSGGGDAGASSGGESSSAGGYSGSSS 437
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 35.9 bits (79), Expect = 0.078
Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 1/120 (0%)
Frame = -1
Query: 1379 GGXXXXPAXXGG-XGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRX 1203
GG P+ GG G G G G P G G G + G GG
Sbjct: 179 GGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGGG----CGGGGSSGGGGYASAPSGGGG-- 232
Query: 1202 WXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXGG 1023
+ GG A G S G +SGG G GG + A GG
Sbjct: 233 YATSGGGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGG 292
Score = 31.1 bits (67), Expect = 2.2
Identities = 29/163 (17%), Positives = 41/163 (25%)
Frame = -1
Query: 1379 GGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRXW 1200
GG G G G P P P G + GG
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPP---PPPPPPAPAPVSSGGGYSEQSSGGGGGS 334
Query: 1199 XXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXXGGA 1020
GG + G S G +S S GG + + + GG
Sbjct: 335 SYSGGGEASSSSGGGYSGGGESSSSGGSSYSSGGDSSSSSGGGYSSGGDSSSSSSSSGGY 394
Query: 1019 XXGFEPRGAXXKXXXXASSXQGVXPXAFXKXGNSXGNFFAAXS 891
G + + SS G + +S G + + S
Sbjct: 395 SGGSDSSSSSSSSSGGYSSGGGDAGASSGGESSSAGGYSGSSS 437
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.18
Identities = 38/133 (28%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Frame = +1
Query: 994 APRGSXPXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXX 1173
AP P PP G+ A G+G PP P P PP P G P
Sbjct: 231 APPAGSPPPPPPPKGSPPLA--GSGSPPPPPAAGSPP-PPRTGSPPP-PPTGSPPPPPAG 286
Query: 1174 XXXXPPXXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXP----XXPXP 1341
PP PP PR P + P SP P G+G P P P
Sbjct: 287 GSPPPPRAGSPPPPPPPRG--SPPTGSLPPPQAG-GSP-PPAGTGSPPPPPRQKRQAPER 342
Query: 1342 XPPXXAGXXXXPP 1380
PP + PP
Sbjct: 343 SPPTGSPPTGSPP 355
Score = 31.5 bits (68), Expect = 1.7
Identities = 31/123 (25%), Positives = 34/123 (27%)
Frame = +1
Query: 1012 PXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXXXXXXPP 1191
P +PP G+ A G P P P PP G PRA PP
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA----GSPP 298
Query: 1192 XXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXPXXPXPXPPXXAGXXX 1371
R P P L P P SP P P PP +
Sbjct: 299 PPPPPRGSP-PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 357
Query: 1372 XPP 1380
PP
Sbjct: 358 RPP 360
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.18
Identities = 38/133 (28%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Frame = +1
Query: 994 APRGSXPXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXX 1173
AP P PP G+ A G+G PP P P PP P G P
Sbjct: 252 APPAGSPPPPPPPKGSPPLA--GSGSPPPPPAAGSPP-PPRTGSPPP-PPTGSPPPPPAG 307
Query: 1174 XXXXPPXXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXP----XXPXP 1341
PP PP PR P + P SP P G+G P P P
Sbjct: 308 GSPPPPRAGSPPPPPPPRG--SPPTGSLPPPQAG-GSP-PPAGTGSPPPPPRQKRQAPER 363
Query: 1342 XPPXXAGXXXXPP 1380
PP + PP
Sbjct: 364 SPPTGSPPTGSPP 376
Score = 31.5 bits (68), Expect = 1.7
Identities = 31/123 (25%), Positives = 34/123 (27%)
Frame = +1
Query: 1012 PXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXXXXXXPP 1191
P +PP G+ A G P P P PP G PRA PP
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA----GSPP 319
Query: 1192 XXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXPXXPXPXPPXXAGXXX 1371
R P P L P P SP P P PP +
Sbjct: 320 PPPPPRGSP-PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 378
Query: 1372 XPP 1380
PP
Sbjct: 379 RPP 381
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.18
Identities = 38/133 (28%), Positives = 43/133 (32%), Gaps = 4/133 (3%)
Frame = +1
Query: 994 APRGSXPXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXX 1173
AP P PP G+ A G+G PP P P PP P G P
Sbjct: 237 APPAGSPPPPPPPKGSPPLA--GSGSPPPPPAAGSPP-PPRTGSPPP-PPTGSPPPPPAG 292
Query: 1174 XXXXPPXXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXP----XXPXP 1341
PP PP PR P + P SP P G+G P P P
Sbjct: 293 GSPPPPRAGSPPPPPPPRG--SPPTGSLPPPQAG-GSP-PPAGTGSPPPPPRQKRQAPER 348
Query: 1342 XPPXXAGXXXXPP 1380
PP + PP
Sbjct: 349 SPPTGSPPTGSPP 361
Score = 31.5 bits (68), Expect = 1.7
Identities = 31/123 (25%), Positives = 34/123 (27%)
Frame = +1
Query: 1012 PXXAPPXXGAXXRAXSGAGGPPXXPXXXXRXLLPXXXXPPLFXPGGEXXPRAXXXXXXPP 1191
P +PP G+ A G P P P PP G PRA PP
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA----GSPP 304
Query: 1192 XXNXSRXPPXPRXXLXPXLXAXXGPLXXLRSPXPXXGSGXXPXXPXXPXPXPPXXAGXXX 1371
R P P L P P SP P P PP +
Sbjct: 305 PPPPPRGSP-PTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 363
Query: 1372 XPP 1380
PP
Sbjct: 364 RPP 366
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 33.9 bits (74), Expect = 0.31
Identities = 36/159 (22%), Positives = 40/159 (25%), Gaps = 2/159 (1%)
Frame = -1
Query: 1382 SGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRX 1203
S G P G G G P P G+ SGP G G G
Sbjct: 193 SDGEAGAPGTKTTNAPGEPGPAGP-PGPPGPNGEAGAGSGPGPEGPAGPPGPNGKDGEAG 251
Query: 1202 WXXXGGXXXXXXARGXXSP--PGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXAPXX 1029
G A G + P G AP+ A AP
Sbjct: 252 APGKDGDAGADGAPGTDAAYCPCPPRSAALGAGGGAEPAGAAPEAAAAAPEAAPEAAPAA 311
Query: 1028 GGAXXGFEPRGAXXKXXXXASSXQGVXPXAFXKXGNSXG 912
GA G EP GA A+ A G G
Sbjct: 312 EGAGGGAEPAGAAAPDAAAAAPEAAPAEAAPAAEGAGGG 350
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical protein
T01C3.7 protein.
Length = 352
Score = 31.5 bits (68), Expect = 1.7
Identities = 30/106 (28%), Positives = 30/106 (28%), Gaps = 1/106 (0%)
Frame = -1
Query: 1385 RSGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXR 1206
R GG GG G G G G GDR G G GG R
Sbjct: 8 RGGGGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFR 67
Query: 1205 XWXXXGGXXXXXXARGXXSPPGXNSG-GXXXXGSKXRXXXXGXXGG 1071
GG RG SP G G G G G GG
Sbjct: 68 G-GRGGGDRGGFGGRG--SPRGGFGGRGSPRGGRGSPRGGRGGAGG 110
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical protein
C18H9.8 protein.
Length = 674
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Frame = +3
Query: 1020 RAPXXGGXXPGXVRGXGA-PXPAXXPXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSP 1196
RAP P +R P P ++ PP SR P P+ G +P
Sbjct: 67 RAPSARARPPSAMRAPPPQPTYENRPTTGMSMRNGGPPVPPSRSGMIPVPPSRSGGPPAP 126
Query: 1197 XPXSXAPXPP 1226
P S A PP
Sbjct: 127 MPVSRAGGPP 136
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.1 bits (67), Expect = 2.2
Identities = 24/93 (25%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Frame = -1
Query: 1346 GXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRXWXXXGGXXXXXX 1167
G G G G G G GD + G G G GG
Sbjct: 82 GGGRGDWGGNGGGGRGGGGRGDWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGR 141
Query: 1166 ARGXXSPPGXNSGGX-XXXGSKXRXXXXGXXGG 1071
PPG N GG G R G GG
Sbjct: 142 GGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGG 174
>AF125459-13|AAD12833.1| 605|Caenorhabditis elegans Hypothetical
protein Y25C1A.3 protein.
Length = 605
Score = 30.7 bits (66), Expect = 2.9
Identities = 36/214 (16%), Positives = 49/214 (22%), Gaps = 7/214 (3%)
Frame = -1
Query: 1436 TXRXXXAAXXXXXXXXXRSGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPX 1257
T + +GG A G G G G S +G
Sbjct: 30 TTTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAAG--GSTSTTAAGGSTVSTAAGGS 87
Query: 1256 XAXXX--GXXQXRGXGGXRXWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXG 1083
A G GG GG A G S +GG +
Sbjct: 88 TASTAAGGSTASTAAGGSTATTAAGGSTATTAAGG--STASTAAGGSTATTAAGGSTAST 145
Query: 1082 XXGGPPAPDXA--RXXAPXXGGAXXGFEPRGAXXKXX---XXASSXQGVXPXAFXKXGNS 918
GG A A + GG+ G+ AS+ G G++
Sbjct: 146 AAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGST 205
Query: 917 XGNFFAAXSCRLIXXXXXANXLXSGSXIXXSXXG 816
+ A GS + G
Sbjct: 206 ASTAAGGSTASTAAGGSTATTAAGGSTATTAAGG 239
Score = 29.9 bits (64), Expect = 5.1
Identities = 35/196 (17%), Positives = 46/196 (23%), Gaps = 7/196 (3%)
Frame = -1
Query: 1382 SGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXX--GXXQXRGXGGX 1209
+GG A G G G G S +G A G GG
Sbjct: 111 AGGSTATTAAGGSTASTAAG--GSTATTAAGGSTASTAAGGSTASTAAGGSTASTAAGGS 168
Query: 1208 RXWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXA--RXXAP 1035
GG A G S +GG + GG A A
Sbjct: 169 TATTAAGGSTATTAAGG--STASTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATT 226
Query: 1034 XXGGAXXGFEPRGAXXKXX---XXASSXQGVXPXAFXKXGNSXGNFFAAXSCRLIXXXXX 864
GG+ G+ AS+ G G++ +
Sbjct: 227 AAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGST 286
Query: 863 ANXLXSGSXIXXSXXG 816
A GS + G
Sbjct: 287 ATTAAGGSTASTAAGG 302
Score = 29.1 bits (62), Expect = 8.9
Identities = 32/178 (17%), Positives = 42/178 (23%), Gaps = 4/178 (2%)
Frame = -1
Query: 1484 TAXXCPGXXXXXXXSXTXRXXXAAXXXXXXXXXRSGGXXXXPAXXGGXGXGXXGXXGXXP 1305
TA G + AA +GG A G G G
Sbjct: 196 TATTAAGGSTASTAAGGSTASTAAGGSTATTA--AGGSTATTAAGGSTASTAAG--GSTA 251
Query: 1304 EPXXGXGDRSXXSGPXXAXXX--GXXQXRGXGGXRXWXXXGGXXXXXXARGXXSPPGXNS 1131
G + +G A G GG GG A G S +
Sbjct: 252 STAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTATTAAGGSTASTAAGG--STASTAA 309
Query: 1130 GGXXXXGSKXRXXXXGXXGGPPAPDXA--RXXAPXXGGAXXGFEPRGAXXKXXXXASS 963
GG + GG A A + GG+ G+ +S
Sbjct: 310 GGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTASTGVTVAS 367
Score = 29.1 bits (62), Expect = 8.9
Identities = 26/147 (17%), Positives = 30/147 (20%), Gaps = 2/147 (1%)
Frame = -1
Query: 1484 TAXXCPGXXXXXXXSXTXRXXXAAXXXXXXXXXRSGGXXXXPAXXGGXGXGXXGXXGXXP 1305
TA G + AA +GG A G G G
Sbjct: 232 TATTAAGGSTASTAAGGSTASTAAGGSTATTA--AGGSTATTAAGGSTASTAAG--GSTA 287
Query: 1304 EPXXGXGDRSXXSGPXXAXXX--GXXQXRGXGGXRXWXXXGGXXXXXXARGXXSPPGXNS 1131
G S +G A G GG GG A G +
Sbjct: 288 TTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTATTAAGGSTASTAAGGSTASTAAGG 347
Query: 1130 GGXXXXGSKXRXXXXGXXGGPPAPDXA 1050
PAP A
Sbjct: 348 STATTAAGGSTASTGVTVASSPAPAAA 374
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 30.3 bits (65), Expect = 3.9
Identities = 24/116 (20%), Positives = 29/116 (25%), Gaps = 1/116 (0%)
Frame = -1
Query: 1382 SGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXG-GXR 1206
SGG GG G G G G G GD + +G G G G G
Sbjct: 811 SGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNG 870
Query: 1205 XWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXA 1038
G G + G S ++ A A A
Sbjct: 871 NGAGAGNGNGAGAGNGNGAGAGDASAAAAAAQAQAAAAAQAQAAAAAAAQQAAAAA 926
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 30.3 bits (65), Expect = 3.9
Identities = 24/116 (20%), Positives = 29/116 (25%), Gaps = 1/116 (0%)
Frame = -1
Query: 1382 SGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXG-GXR 1206
SGG GG G G G G G GD + +G G G G G
Sbjct: 441 SGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGNG 500
Query: 1205 XWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGGPPAPDXARXXA 1038
G G + G S ++ A A A
Sbjct: 501 NGAGAGNGNGAGAGNGNGAGAGDASAAAAAAQAQAAAAAQAQAAAAAAAQQAAAAA 556
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 3.9
Identities = 23/103 (22%), Positives = 25/103 (24%)
Frame = -1
Query: 1379 GGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDRSXXSGPXXAXXXGXXQXRGXGGXRXW 1200
GG PA GG G G G + G G G GG
Sbjct: 322 GGGGDFPAGGGGGGYSTGGGGGRA-DSGGAAGGAGGAGGYSGGGGGGGGGAAAGGGYNAG 380
Query: 1199 XXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGG 1071
GG A P +GG G G G
Sbjct: 381 GGGGGAPQAAPAPQAAPAPAAPAGGGYNAGGGGGAGGGGGYAG 423
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 29.9 bits (64), Expect = 5.1
Identities = 26/108 (24%), Positives = 27/108 (25%), Gaps = 3/108 (2%)
Frame = -1
Query: 1385 RSGGXXXXPAXXGGXGXGXXGXXGXXPEPXXGXGDR--SXXSGPXXAXXXGXXQXRGXGG 1212
R GG GG G G G G G G A G Q GG
Sbjct: 56 RGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGG 115
Query: 1211 XR-XWXXXGGXXXXXXARGXXSPPGXNSGGXXXXGSKXRXXXXGXXGG 1071
W G G NS GS+ G GG
Sbjct: 116 SSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRGG 163
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +3
Query: 1047 PGXVRGXGAPXPAXXPXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSPXPXSX-APXP 1223
P R P P P PAI PP P TS P S AP P
Sbjct: 231 PPPARPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAPPPPPRIASKTSVAPTSSRAPLP 290
Query: 1224 P 1226
P
Sbjct: 291 P 291
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 5.1
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Frame = +3
Query: 1047 PGXVRGXGAPXPAXXPXPXLTXXXXXPPAIXSRGRGXPPXPAXXGXXTSPXPXSX-APXP 1223
P R P P P PAI PP P TS P S AP P
Sbjct: 233 PPPARPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAPPPPPRIASKTSVAPTSSRAPLP 292
Query: 1224 P 1226
P
Sbjct: 293 P 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,413,010
Number of Sequences: 27780
Number of extensions: 386358
Number of successful extensions: 981
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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