Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C06_e43_06.seq
         (1565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.57 

>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 504 PGFCIALP---NSY*L*FFIVLIHFSFLHCFHHVIHVFHRYCLCVYL*LXGAKIKL*KEI 674
           P  C A P   N Y L +F  ++  SF H F H+++        +YL L G  +      
Sbjct: 141 PMLCFANPKSANGYTL-YFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLNGIGFT 199

Query: 675 RFLIHKNMSKKKII 716
            FL HK  +  K++
Sbjct: 200 TFLYHKKYTTDKLL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,707,332
Number of Sequences: 5004
Number of extensions: 65606
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 882067430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)