Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C06_e43_06.seq
         (1565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83...    61   3e-09
07_03_1000 - 23220878-23221821,23222164-23223001                       54   4e-07
03_02_0187 - 6248226-6249226,6249296-6250148                           49   1e-05
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    30   4.3  

>05_01_0121 -
           833885-833949,834180-834430,834545-834604,834893-834926,
           835746-835805,836409-836509,836939-837039,837209-837289,
           837580-837650,837738-837849,838138-838173,838865-838951,
           839055-839396
          Length = 466

 Score = 60.9 bits (141), Expect = 3e-09
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = +3

Query: 138 ILSKGHKVVYSS--AWYLDHLMSGGDWTNFYLSDPRQMVRQYSPTANVDNIVGGEACMWG 311
           ++ KG + + S+   WYLDHL     W +FY S+P   +     TA    ++GGE CMWG
Sbjct: 371 VVEKGFRCIMSNQGVWYLDHL--DVPWQDFYTSEPLAGINN---TAQQKLVLGGEVCMWG 425

Query: 312 EVVNDMNVISRIWSRASAVA 371
           E  +  +V   IW RA+A A
Sbjct: 426 ETADTSDVQQTIWPRAAAAA 445


>07_03_1000 - 23220878-23221821,23222164-23223001
          Length = 593

 Score = 53.6 bits (123), Expect = 4e-07
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +3

Query: 186 DHLMSGGDWTNFYLSDPRQMVRQYSPTANVDN---IVGGEACMWGEVVNDMNVISRIWSR 356
           D+  SGG W   Y +  R      +     +    +VGGE  MW E V+   +  R+W R
Sbjct: 473 DYGTSGGSWCGPYKTWQRVYDYDVAGGLTAEEARLVVGGEVAMWTEQVDAAVLDGRVWPR 532

Query: 357 ASAVAERLWSPETEGLRYMNKVPNEVYSRLEEHTCRMNRRGIDAQP 494
           ASA+AE LWS   +      K   E   RL +   RM  RG+ A+P
Sbjct: 533 ASAMAEALWSGNRDATG--RKRYAEATDRLTDWRHRMVGRGVRAEP 576


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +3

Query: 282 IVGGEACMWGEVVNDMNVISRIWSRASAVAERLWSPETEGLRYMNKVPNEVYSRLEEHTC 461
           ++GGE  +W E  ++  + +R+W RA+A AE LWS   +G     +  N    RL +   
Sbjct: 532 VLGGEVALWSEQSDETVLDARLWPRAAAAAETLWS-GNKGSNGKKRYANAT-DRLNDWRH 589

Query: 462 RMNRRGIDAQP 494
           RM  RGI A+P
Sbjct: 590 RMVERGIRAEP 600


>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 72  HEAPRIPFIQVWKPHEKYEMLHILSKGHKVVYSS 173
           H+   I  + +  P E Y  LH+++KG  VVYS+
Sbjct: 171 HDGVDILSLSIGGPFENYGTLHVVAKGIPVVYSA 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,545,503
Number of Sequences: 37544
Number of extensions: 468935
Number of successful extensions: 1027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5058519088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)