Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C06_e43_06.seq
         (1565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              86   8e-17
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              65   1e-10
SB_21213| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.088
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.27 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.62 
SB_29538| Best HMM Match : DUF729 (HMM E-Value=1.7)                    31   1.9  
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              30   4.4  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 85.8 bits (203), Expect = 8e-17
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
 Frame = +3

Query: 96  IQVWKPHEKYEMLHIL-SKGHKVVYSSAWYLDHLMSGGDWTNFYLSDPRQMVRQYSPTAN 272
           + VWK     E+  +  +K  K + SS WYL+++  G DW N+Y  +P            
Sbjct: 494 VNVWKGGWPAELAKVTGAKKLKAILSSPWYLNYISYGIDWPNYYKVEPTDFE---GTDQE 550

Query: 273 VDNIVGGEACMWGEVVNDMNVISRIWSRASAVAERLWSPETEGLRYMNKVPNEVYSRLEE 452
            + ++GG  CMWGE V+  N+++R W RA A+AERLWS ++             Y+R+ E
Sbjct: 551 KELVIGGTGCMWGEFVDGTNILARTWPRALAIAERLWSSKS------TTDMTSAYARIWE 604

Query: 453 HTCR 464
           H CR
Sbjct: 605 HRCR 608


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 32/88 (36%), Positives = 51/88 (57%)
 Frame = +3

Query: 129 MLHILSKGHKVVYSSAWYLDHLMSGGDWTNFYLSDPRQMVRQYSPTANVDNIVGGEACMW 308
           ++    KG++ V S+ +Y+D + S     + Y  DP    +  +P      ++GGEA MW
Sbjct: 205 LIEAAKKGYQSVLSNGYYIDRMQSV---VHHYKVDPIGNAK-LTPAQRA-RVLGGEATMW 259

Query: 309 GEVVNDMNVISRIWSRASAVAERLWSPE 392
           GE+V  + + SRIW R +A+AER WSP+
Sbjct: 260 GELVTPLTIDSRIWPRTAAIAERFWSPK 287


>SB_21213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 35.9 bits (79), Expect = 0.088
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 357 ASAVAERLWSPETEGLRYMNKVPNEVYSRLEEHT--CRMNRRGIDAQPPSGPGF 512
           A   AE  W  +T    Y NK P E+   +  H   C M+ +  D  P  GPGF
Sbjct: 151 ACRFAENAWFIKTNETGYENKTPLEIAQEMFSHADGCTMSAKKNDLSPNFGPGF 204


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +3

Query: 144  SKGHKVVYSSAWYLDHLMSGGDWTNFYLSDPRQMVRQYSPTANVDNIVGGEACMWGEVVN 323
            S+G  VV+    +L      G       + P     Q   T N+ N  G EA +W E+  
Sbjct: 772  SRGEHVVFPCMSWLAPDEGDGKTVRELAAKPSTYHLQIK-TGNLKN-AGTEANVWAEITG 829

Query: 324  DMNVISRIWSRASAVAERLWSPE 392
            D     RI    S + ERL+ P+
Sbjct: 830  DRGTTGRIQLERSGIMERLFEPD 852


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 33.1 bits (72), Expect = 0.62
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 208  TGLTSTCQIHGRWCASTAPPPTLTI*SE--VKLVCGGKLLT 324
            +GLT    + G++C STAPPP  +  S   V+LV  G+ +T
Sbjct: 1172 SGLTEHAPLIGKYCGSTAPPPIKSSRSAVFVRLVVSGRSVT 1212


>SB_29538| Best HMM Match : DUF729 (HMM E-Value=1.7)
          Length = 534

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = -2

Query: 457 VCSSRREYTSFGTLFMYRRPSVSGLHNLSATALALDHILLITFISLTTSPHIQASPPTIL 278
           V  ++ +  +  TL +     ++   + +A+ L    IL+IT  + +  PH  A  P   
Sbjct: 168 VSKNKGDQNTMHTLLLVNSKLLALYSSRNASELQAADILMITLFAQSVFPHTSAVIPYSS 227

Query: 277 STLAVGLYWRTICRGS 230
           +     L ++T+C+GS
Sbjct: 228 NRTPPPLAYQTVCKGS 243


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 276  DNIVGGEACMWGEVVNDMNVI-SRIWSRASAVAERLW 383
            +NI+G    +W E V   + + S I+ R  AVAER W
Sbjct: 1493 ENIIGMAGALWTETVRTADQMDSMIFPRLLAVAERAW 1529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,542,012
Number of Sequences: 59808
Number of extensions: 511715
Number of successful extensions: 1174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5117670772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)