Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C06_e43_06.seq
         (1565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...    91   1e-18
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...    91   1e-18
U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical pr...    29   9.0  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
 Frame = +3

Query: 96  IQVWK--PHEK-YEML-HILSKGHKVVYSSAWYLDHLMSGGDWTNFYLSDPRQMVRQY-- 257
           I +WK   HE+ YE + +I S+   V+ S+ WYL+++  G DW +          R Y  
Sbjct: 395 IHIWKGNTHEEIYEQVKNITSQNFPVIVSACWYLNYIKYGADWRDEIRGTAPSNSRYYYC 454

Query: 258 SPT------ANVDNIVGGEACMWGEVVNDMNVISRIWSRASAVAERLWSPETEGLRYMNK 419
            PT      A  + + GG A +WGE+V++ N+ +R+W RASA AERLWSP  +  R    
Sbjct: 455 DPTNFNGTVAQKELVWGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQR---- 510

Query: 420 VPNEVYSRLEEHTCRMNRRGIDAQPPSGPGFC 515
              + + R+ E  CR+  RG   QP + P +C
Sbjct: 511 -AEDAWPRMHELRCRLVSRGYRIQPNNNPDYC 541


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score = 91.5 bits (217), Expect = 1e-18
 Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 12/152 (7%)
 Frame = +3

Query: 96  IQVWK--PHEK-YEML-HILSKGHKVVYSSAWYLDHLMSGGDWTNFYLSDPRQMVRQY-- 257
           I +WK   HE+ YE + +I S+   V+ S+ WYL+++  G DW +          R Y  
Sbjct: 395 IHIWKGNTHEEIYEQVKNITSQNFPVIVSACWYLNYIKYGADWRDEIRGTAPSNSRYYYC 454

Query: 258 SPT------ANVDNIVGGEACMWGEVVNDMNVISRIWSRASAVAERLWSPETEGLRYMNK 419
            PT      A  + + GG A +WGE+V++ N+ +R+W RASA AERLWSP  +  R    
Sbjct: 455 DPTNFNGTVAQKELVWGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQR---- 510

Query: 420 VPNEVYSRLEEHTCRMNRRGIDAQPPSGPGFC 515
              + + R+ E  CR+  RG   QP + P +C
Sbjct: 511 -AEDAWPRMHELRCRLVSRGYRIQPNNNPDYC 541


>U41532-1|AAF99904.3|  370|Caenorhabditis elegans Hypothetical
           protein F11D5.5 protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 436 YTSFGTLFMYRRPSVSGLHNLSATALALDHILLITFISLTT 314
           +T F  LF YR+ ++ G+ N   TAL ++  L+IT  SL T
Sbjct: 131 FTCFNELF-YRQTTILGVENSICTALNIN--LIITIFSLPT 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,285,653
Number of Sequences: 27780
Number of extensions: 391626
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)