Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C04_e27_06.seq
         (1503 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD8621 Cluster: PREDICTED: hypothetical protein;...    36   3.6  
UniRef50_UPI0000357952 Cluster: PREDICTED: similar to RNP partic...    34   8.4  

>UniRef50_UPI0000DD8621 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 560

 Score = 35.5 bits (78), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 126 DGSGSSDGWARRVSSVMSARVLATWSGRRLLATRSCLDSFDEPRPW 263
           +GSG+  GW+R  S V +      W  R +  TRS   + D  RPW
Sbjct: 439 EGSGAKGGWSREASGVPAPGGGWPWVSREVPGTRSFGPAPDSTRPW 484


>UniRef50_UPI0000357952 Cluster: PREDICTED: similar to RNP particle
           component; n=1; Mus musculus|Rep: PREDICTED: similar to
           RNP particle component - Mus musculus
          Length = 183

 Score = 34.3 bits (75), Expect = 8.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 129 GSGSSDGWARRVSSVMSARVLATWSGRRLLATRSCLDSFDEPRPWKQR 272
           G G   G      S +S+R L T+  RR +A R C D +D    W  R
Sbjct: 27  GQGPFSGLIFNQESELSSRPLCTFPARRKVACRECSDHWDSGESWTPR 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,770,465
Number of Sequences: 1657284
Number of extensions: 13536638
Number of successful extensions: 31547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31381
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 159698672100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)