Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C04_e27_06.seq
         (1503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    34   0.34 
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     30   4.1  
09_03_0187 - 13253787-13254509                                         30   5.5  
01_06_0604 + 30536172-30537143                                         29   9.5  

>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 33.9 bits (74), Expect = 0.34
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -2

Query: 275 LALFPWARLIERVEAGAR------RQKPPAGPRRQDAGGHD**HSPRPPITATTTILAVM 114
           +A  PW  ++E +E G +      RQ P AGPR       +  H P+P   A  +  A  
Sbjct: 1   MAKSPWRTVLEPLEHGEQHRLEEMRQHPVAGPRASSGDAAERRHLPKPAAAANCSSSA-- 58

Query: 113 GSATPQNXWLSXSCR 69
            +ATP N   S S R
Sbjct: 59  -TATPPNAATSPSKR 72


>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 18  GGGRSXN*WXXPGSAGNSARGTKPXVLRSGAAHHC*D-GSGSSDGWARRVSSVMSARV 188
           GGGR  N W  PG     A    P    + AA    D G+  S G   R++S    RV
Sbjct: 120 GGGRGGNVWAQPGRGRGGAPAPAPA--PAPAARRIQDEGAARSSGTVERIASTEVVRV 175


>09_03_0187 - 13253787-13254509
          Length = 240

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 163 CHQSCPPASWRRGPAGGFWRRAPA 234
           C    PP+SW  GP GG W  A A
Sbjct: 147 CSDLEPPSSWLLGPLGGGWADADA 170


>01_06_0604 + 30536172-30537143
          Length = 323

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 150 WARRVSSVMSARVLATWSGRRLLATRSCLDSFDE 251
           W  R S  +S+R L+T S RRL+++ S  D +DE
Sbjct: 151 WKERAS--VSSRRLSTHSSRRLMSSSSSDDEYDE 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,794,877
Number of Sequences: 37544
Number of extensions: 396769
Number of successful extensions: 942
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)