Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C03_e19_05.seq
         (1600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    28   4.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   7.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   7.2  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   7.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   9.5  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 52  RAAGNSARGXPRLHGRLKRKIT*SSNSSNRMTYLTYGLLGAYAISKVANHVEISNQRISL 231
           R AGNSA G P +  R+ + +  + N     +    G++  + +       E S  ++SL
Sbjct: 472 RIAGNSAIGNPAVKDRINKIVWKNGNPDRLYSLHENGMVRVFDVKSEELLAEKSISKVSL 531

Query: 232 VG 237
            G
Sbjct: 532 TG 533


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 286 TAGATTHGRRPVTRNSVSPTMQSSI 360
           T     HGR P+  N+ SPT  ++I
Sbjct: 514 TTSGREHGRTPIRSNTFSPTFDTTI 538


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 276 QIPNGWGYNPWSQTGHKKLRQPDNAEFD 359
           QIP  W Y  W+QT  K+  +P+    D
Sbjct: 474 QIPCDWVYIQWAQTYIKQSSEPEEVVLD 501


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 427 TMSLVTTRSLSCARTPMNYSITSLAPTPVSVCDYNRQLHLTAV 555
           T ++V+  S S A  P   S  S   + ++  +YNRQ H+T V
Sbjct: 654 TSTIVSNDSSSTASIPSQISRISQVNSLLNDYNYNRQSHITRV 696


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 TMSLVTTRSLSCARTPMNYSITSLAPTPVSV 519
           T   V T   S + +P+NYSI S   TP S+
Sbjct: 356 TADAVVTLVPSHSSSPVNYSINSAKSTPASI 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,507,391
Number of Sequences: 5004
Number of extensions: 84997
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 903871344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)