Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C03_e19_05.seq
         (1600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0756 - 21272122-21272784                                         30   5.9  
08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461     29   7.8  

>07_03_0756 - 21272122-21272784
          Length = 220

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  PAVAAALXTSGIPRAAGNSARGXPRLHGRLKR 108
           PA AA    +   R  G  ARG PRL GRL+R
Sbjct: 20  PAAAARAAAARRVRGGGGEARG-PRLRGRLRR 50


>08_02_0462 + 17444726-17445135,17445271-17445546,17446523-17448461
          Length = 874

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 336 DGVSCDRSATMGCSPSRWESGL*VKSFRDWRTRTN-QGYSLVRDLYVI 196
           +GV+C+  + +GC PS  +  L V  +RD    +   G+S +RD   I
Sbjct: 735 EGVNCEDLSIIGCLPSLLQLSLRVPGYRDSLIISGCYGFSCLRDFCFI 782


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,915,441
Number of Sequences: 37544
Number of extensions: 543776
Number of successful extensions: 1168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5186142276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)