Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_C03_e19_05.seq
(1600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.21
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.5
SB_59421| Best HMM Match : RVT_1 (HMM E-Value=0.18) 30 5.9
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_55545| Best HMM Match : RVT_1 (HMM E-Value=0.052) 30 5.9
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 30 5.9
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 30 5.9
SB_8231| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_46869| Best HMM Match : RnaseH (HMM E-Value=0.69) 30 5.9
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69) 30 5.9
SB_23176| Best HMM Match : RnaseH (HMM E-Value=0.69) 30 5.9
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 30 5.9
SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 30 5.9
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.9
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 34.7 bits (76), Expect = 0.21
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 369 TSESCLSILNNVYNDGIAWHDVACYHEKPIVCEDSDEL-LNYVA 497
T E C+ I ++N+ + W D+ C + P VCE S +L L++ A
Sbjct: 124 TGEDCVQI--KIWNNTVTWADLGCETKLPYVCEKSRDLYLSFAA 165
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 31.9 bits (69), Expect = 1.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 360 INQTSESCLSILNNVYNDGIAWHDVACYHEKPIVCEDSD 476
+++T +C + N DG +H + +H+KP VC D D
Sbjct: 520 LDETVAACNTPPTNPIYDGCYYHYLPWFHQKPCVCLDCD 558
>SB_59421| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 484
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 252 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 284
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 781 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 813
>SB_55545| Best HMM Match : RVT_1 (HMM E-Value=0.052)
Length = 381
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 140 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 172
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 420 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 452
>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 1283
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 683 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 715
>SB_8231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 58 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 90
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 844 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 876
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 453 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 485
>SB_46869| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 431
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 13 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 45
>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 756
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 58 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 90
>SB_23176| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 377
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 58 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 90
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 337 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 369
>SB_20170| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1212
Score = 29.9 bits (64), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 177 CDFKGCESRRDLEPKN--ILGWFWSANREKISP 269
C+ + S+ + PK ILGW WSA K SP
Sbjct: 792 CNLRLSASKTIINPKTTTILGWIWSAGTLKASP 824
>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 93 WXTQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCES 200
W + NL F+ ++QN Y S C +GC+S
Sbjct: 993 WSLAKTKNLCFRCLKQNHRGYECRSNDRCSVEGCKS 1028
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,758,293
Number of Sequences: 59808
Number of extensions: 639618
Number of successful extensions: 1568
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5246786319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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