Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C03_e19_05.seq
         (1600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17 pr...    34   1.7  
AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17 pr...    34   1.7  
AF016694-1|AAB71687.1|  246|Homo sapiens small intestinal mucin ...    33   3.8  

>AJ606308-1|CAE54436.1| 4262|Homo sapiens secreted mucin MUC17
            protein.
          Length = 4262

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = +1

Query: 238  SGPPIAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQSSISTKHLSHA*VY*TMSIMTV 417
            S PP A+   + T  P+ G+T     P+TR  VS TM +S  T  LS      +  + T 
Sbjct: 1022 SPPPTAEGTSMPTSTPSEGST-----PLTRMPVSTTMVASSETSTLSTTPADTSTPVTTY 1076

Query: 418  *RGTMSLVTTRSLSCARTPMNYSITSLAPTPVS 516
             + + S  T    S   +  +   T L   PVS
Sbjct: 1077 SQASSSSTTADGTSMPTSTYSEGSTPLTSVPVS 1109



 Score = 31.5 bits (68), Expect = 8.9
 Identities = 28/93 (30%), Positives = 39/93 (41%)
 Frame = +1

Query: 238  SGPPIAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQSSISTKHLSHA*VY*TMSIMTV 417
            S PP A+     T  PT+  ++ G  P+TR  VS TM +S  T  LS      +  + T 
Sbjct: 2318 SPPPTAEG----TSMPTS-TSSEGNTPLTRMPVSTTMVASFETSTLSTTPADTSTPVTTY 2372

Query: 418  *RGTMSLVTTRSLSCARTPMNYSITSLAPTPVS 516
             +   S  T    S   +  +   T L   PVS
Sbjct: 2373 SQAGSSPTTADDTSMPTSTYSEGSTPLTSVPVS 2405


>AJ606307-1|CAE54435.1| 4493|Homo sapiens membrane mucin MUC17
            protein.
          Length = 4493

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = +1

Query: 238  SGPPIAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQSSISTKHLSHA*VY*TMSIMTV 417
            S PP A+   + T  P+ G+T     P+TR  VS TM +S  T  LS      +  + T 
Sbjct: 1022 SPPPTAEGTSMPTSTPSEGST-----PLTRMPVSTTMVASSETSTLSTTPADTSTPVTTY 1076

Query: 418  *RGTMSLVTTRSLSCARTPMNYSITSLAPTPVS 516
             + + S  T    S   +  +   T L   PVS
Sbjct: 1077 SQASSSSTTADGTSMPTSTYSEGSTPLTSVPVS 1109



 Score = 31.5 bits (68), Expect = 8.9
 Identities = 28/93 (30%), Positives = 39/93 (41%)
 Frame = +1

Query: 238  SGPPIAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQSSISTKHLSHA*VY*TMSIMTV 417
            S PP A+     T  PT+  ++ G  P+TR  VS TM +S  T  LS      +  + T 
Sbjct: 2318 SPPPTAEG----TSMPTS-TSSEGNTPLTRMPVSTTMVASFETSTLSTTPADTSTPVTTY 2372

Query: 418  *RGTMSLVTTRSLSCARTPMNYSITSLAPTPVS 516
             +   S  T    S   +  +   T L   PVS
Sbjct: 2373 SQAGSSPTTADDTSMPTSTYSEGSTPLTSVPVS 2405


>AF016694-1|AAB71687.1|  246|Homo sapiens small intestinal mucin
           MUC3 protein.
          Length = 246

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 28/93 (30%), Positives = 40/93 (43%)
 Frame = +1

Query: 238 SGPPIAKRFHLQTRFPTAGATTHGRRPVTRNSVSPTMQSSISTKHLSHA*VY*TMSIMTV 417
           S PP A+   + T  P+ G+T     P+TR  VS TM +S  T  LS      +  + T 
Sbjct: 20  SPPPTAEGTSMPTSTPSEGST-----PLTRMPVSTTMVASSETSTLSTTPADTSTPVTTY 74

Query: 418 *RGTMSLVTTRSLSCARTPMNYSITSLAPTPVS 516
            + + S  T    S   +  +   T L   PVS
Sbjct: 75  SQASSSPTTADGTSMPTSTYSEGGTPLTSVPVS 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,493,141
Number of Sequences: 237096
Number of extensions: 2959831
Number of successful extensions: 9032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9030
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23902552644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)