Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C03_e19_05.seq
         (1600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical pr...    30   4.0  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    30   4.0  
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    30   5.3  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   7.0  

>Z68748-8|CAL36498.1|  583|Caenorhabditis elegans Hypothetical
           protein F13H10.3c protein.
          Length = 583

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -1

Query: 271 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVHM*GTSFCWMSLKIRLFSS*VXH 92
           +G I S+ A   QP +F G   LRD   L  H   ++H    +    +L+ RL++     
Sbjct: 45  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLHREHNN----ALRYRLYNRLDPG 100

Query: 91  GDEVPLVPNXLQP 53
           G+ + +  + L P
Sbjct: 101 GEHLTMPDHVLPP 113


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -1

Query: 271 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVHM*GTSFCWMSLKIRLFSS*VXH 92
           +G I S+ A   QP +F G   LRD   L  H   ++H    +    +L+ RL++     
Sbjct: 77  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLHREHNN----ALRYRLYNRLDPG 132

Query: 91  GDEVPLVPNXLQP 53
           G+ + +  + L P
Sbjct: 133 GEHLTMPDHVLPP 145


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 271 VGEIFSRLADQNQPRIFFGSRSLRDSQPLKSHRRPEVH 158
           +G I S+ A   QP +F G   LRD   L  H   ++H
Sbjct: 77  IGSIPSQSAATRQPYLFTGGLGLRDESLLSLHSEDDLH 114


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 QEENNLIFKLIQQNDVPYIWTSGRLC 179
           ++ENN IF  +  + V Y WT G +C
Sbjct: 146 EQENNAIFDFVSNSSVDYFWT-GLIC 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,219,384
Number of Sequences: 27780
Number of extensions: 477303
Number of successful extensions: 1117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4639367406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)