Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C02_e11_06.seq
         (1512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    30   0.96 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    28   3.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   5.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   6.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   6.8  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   8.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   8.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    27   8.9  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -3

Query: 211 KKHYG---QNNSTNFS-PAK-FYFYIDNLKIFINKNTFNLY 104
           +KHY    Q   T FS P K FYF +DN  +FI+K    L+
Sbjct: 647 EKHYYPVFQPAPTEFSYPEKHFYFAVDNFNVFISKEVVRLF 687


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 351 SLIKTKSLRFSSLHFTRHLDLCCSSQMYSEVRRVQKCCRIFSRSDYGKNITDKTI 187
           SL     L FSS HF R ++          ++RV+  C   S  +  K   +KT+
Sbjct: 270 SLATLLRLNFSSTHFLRLIEFYWGVPTNLIIKRVEVVCSSISYKESDKKELEKTV 324


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 510 SMASETGRSTRRFSARRTIPLTVLNSATLGMLSAPRNSLHTL 385
           S + + G ST RFS       + + +     +SAPR SL  L
Sbjct: 431 SKSDDVGNSTHRFSTASAASTSAVKTEKEKKMSAPRRSLDKL 472


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
 Frame = +2

Query: 587 MTCDLTDQSRERCYQRQ-----------KRFPLNGQT--RIKNNAFRNYQQFFNNIFYCN 727
           ++C+L  + RE+C +R+           KRF  N Q+    KN  F +    ++N+FY N
Sbjct: 112 LSCELPSEHREKCLKRRNSSLSSNLHANKRFLFNSQSDGNKKNETFPSTN--YSNVFYPN 169

Query: 728 KQVN*L*TTKGVCNEQTLQTDA 793
                   +K V +E T   DA
Sbjct: 170 NC-----DSKEVASETTFSLDA 186


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 363 DVLVSLIKTKSLRFSSLHFTRHLDLCCSSQMYSEVRRVQKCCRIFS 226
           DVLV +++  +  FSSL+   + D     Q+Y  ++   K   I+S
Sbjct: 601 DVLVFMLEQTNSTFSSLNRKLYSDKIIVGQIYDHIKDYNKALAIWS 646


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 621 DVINGKKGFR*TVRRASRTTHLGTI 695
           D++  KK  R TV+R   T+HL T+
Sbjct: 250 DIVRDKKSIRETVQRCLITSHLDTL 274


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = -1

Query: 483 TRRFSARRTIPLTVLNSATLGMLSAPRNSLHTLPNLQQRGDVLVSLIKTKSLRFSSLH 310
           T  FS+R + P   + S+ +   +AP+N+LH++P+     ++  +L  T+  +  +L+
Sbjct: 503 TSLFSSRLSKPSNPIVSS-VSQANAPKNALHSMPSPTSLANLPSNLSDTQYKKLYNLY 559


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 460 TPCAKSPRTPAGFRGHRLLKAVWSFQRPGGCRRR 561
           TP   +PRTP    GHR++KA  ++ +    +RR
Sbjct: 57  TPEVVTPRTP----GHRIIKAKGAYTKDRSAKRR 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,547,787
Number of Sequences: 5004
Number of extensions: 83601
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)