Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C02_e11_06.seq
         (1512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0158 - 1067721-1067827,1067951-1068008,1068276-1068334,106...    30   4.2  
08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292     29   7.3  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   9.6  
03_01_0323 - 2522834-2523229,2524737-2524952                           29   9.6  

>05_01_0158 -
           1067721-1067827,1067951-1068008,1068276-1068334,
           1069009-1069087,1069177-1069233,1069531-1069580,
           1069805-1069886,1070431-1070487,1070741-1070828,
           1071171-1071247,1071325-1071443,1071719-1071950
          Length = 354

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -1

Query: 558 APTSSRPLKAPHSFQQSMASETGRSTRRFSARRTIPLTVLNSATLGMLSAPRNSL 394
           AP+S+ P++         ASETG  T++ SA R + L VL +   G+  A R+ +
Sbjct: 81  APSSTPPVRTTDKESTKPASETG-ITKKGSAIRRVTLVVLAAVFFGVSIALRDGV 134


>08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292
          Length = 862

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 441 LNSATLGM-LSAPRNSLHTLPNLQQRGDVLVSLIKTKSLRFSSLHFTRHLDLCCS 280
           L+   LG  L +P  S     +L  R ++L SL+    + F +  + RH   CCS
Sbjct: 218 LHRIKLGFFLHSPFPSSEIYRSLPVRDEILKSLLNADLIGFQTFDYARHFLSCCS 272


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 518 KLCGAFNGREDVGAVSSQSAAADMTCDLTDQSRERCYQRQKRFPLNGQTRIKNNA 682
           K C    GR+ VGAVS ++   D  C L    R+     Q  + L  +   K NA
Sbjct: 568 KCCICLGGRDCVGAVSQENLQCDYACPLCFCKRQLSV-LQSYYELQNKENGKRNA 621


>03_01_0323 - 2522834-2523229,2524737-2524952
          Length = 203

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 396 LHTLPNLQQRGDVL-VSLIKTKSLRFSSLHFT 304
           +H LP+L++RGD+L    +KT S+R   + FT
Sbjct: 35  VHDLPSLKKRGDILCYDEVKTISIRSRGVVFT 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,832,775
Number of Sequences: 37544
Number of extensions: 561958
Number of successful extensions: 1137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)