Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C02_e11_06.seq
         (1512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    40   0.005
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    33   0.70 
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    33   0.70 
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    31   2.1  

>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 39.9 bits (89), Expect = 0.005
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
 Frame = +2

Query: 233  IRQHFWTRRTSEYICELQQRSKWRV-KCRELN----LNDLVLIKETNTSPLCWRLGRVCK 397
            I +  W      Y+ EL++  K R+   RE+N    +  +VLI + N     W++G++ +
Sbjct: 1047 IIEDIWKIWNKTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRNNWKMGKITE 1106

Query: 398  LFLGADNIPRVAELSTVNG-IVRRALNRLVLLPVSE 502
                 D I R A L T  G  +RR +N +  L + E
Sbjct: 1107 TKPSTDGILREAHLLTATGRTIRRPINLITPLEIEE 1142


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 605 DQSRERCYQRQKRFPLN--GQTRIKNNAFRNYQQFFN 709
           D++R+  + R +   LN   Q  +KNN FRNYQQF +
Sbjct: 31  DETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFID 67


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 605 DQSRERCYQRQKRFPLN--GQTRIKNNAFRNYQQFFN 709
           D++R+  + R +   LN   Q  +KNN FRNYQQF +
Sbjct: 31  DETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFID 67


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
 Frame = +2

Query: 272 ICELQQR-SKWRVKCRELNLNDLVLIKETNTSPLCWRLGRV--------CKLFLGADNIP 424
           +CE  Q  S W V CR+  +ND +  +  N  PL  R   +               DNI 
Sbjct: 27  LCECDQNDSSWSVYCRKAIINDTIYAEILNQLPLTLRSLHIQPPSNRIGSNKLRWNDNIN 86

Query: 425 RVAELSTVNGIVRR--ALNRLVLLPVSEAID 511
           R A+L  +  I  +  A++R + LP  E +D
Sbjct: 87  RFAQLRVLRLINCQIPAMSRSIRLPSLEVLD 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,832,822
Number of Sequences: 27780
Number of extensions: 497636
Number of successful extensions: 1103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)