Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C02_e11_06.seq
         (1512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   9.1  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 605 DQSRERCYQRQKRFPLNGQTRIKNNAFRNYQQFFNNIFYCNKQV 736
           ++SR+R  + + R P    +   N  + NY  + NN    NK++
Sbjct: 65  ERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKL 108


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 166 KFYFYIDNLKIFINKNTFNLYHGQPTCFLXLVPNXLQP 53
           K+++ IDN  + +N     +      CF  +  N L+P
Sbjct: 538 KYFYEIDNWMLDLNSGLNKITRNSLDCFFTM--NDLEP 573


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 166 KFYFYIDNLKIFINKNTFNLYHGQPTCFLXLVPNXLQP 53
           K+++ IDN  + +N     +      CF  +  N L+P
Sbjct: 538 KYFYEIDNWMLDLNSGLNKITRNSLDCFFTM--NDLEP 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,346
Number of Sequences: 438
Number of extensions: 6842
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52874250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)