Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C01_e3_05.seq
         (1568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    33   0.008
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   2.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 32.7 bits (71), Expect = 0.008
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = +1

Query: 430 EETKPKPDDKVKADEKT-------------PEPKSAEPKPTDVPAESKPEEKPKDRKPTP 570
           EE  P+  DK++ DE T             PE ++A P P DVP  S P    +D     
Sbjct: 18  EEGSPEEGDKLEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDPLNCR 77

Query: 571 DVPS 582
           D+P+
Sbjct: 78  DLPN 81



 Score = 27.5 bits (58), Expect = 0.29
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 454 DKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDV 576
           DK K +EK+P P+   P  TD+  +        +   +P V
Sbjct: 688 DKSKQNEKSPSPQQRSPSVTDLSTKDGTTVPESNNGSSPSV 728


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 430 EETKPKPDDKVKADEKTPEPKSAE---PKPTDVPAESKPEEKPKDRKPTPDVPSK 585
           E  K   DD+ + ++K  E +  +   PK  DV  +   + K +D+K    +  K
Sbjct: 218 EREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEK 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,221
Number of Sequences: 336
Number of extensions: 3624
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 47320350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)