Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_C01_e3_05.seq
(1568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 30 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 1.0
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 30 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 2.3
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 2.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 28 3.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 4.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 4.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 28 4.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 4.0
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 28 4.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 4.0
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 5.3
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 27 7.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 7.1
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 27 7.1
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 27 9.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 9.3
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 27 9.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 9.3
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 430 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRK-PTPDVPSKSKDTPA* 606
+E KP + VK+ EK P+ K E K ++ KD+K P P K+ TP
Sbjct: 221 KEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEKAPKEPPKAA-TPVP 279
Query: 607 SERSSH*GF 633
S GF
Sbjct: 280 SMIDFRIGF 288
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 478 TPEPKSAEPKPTDVPAESKPEEKPKDRKPT-PDVPSKSKDT 597
TP SA P P +P+ PE P P P +P S T
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGT 263
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 427 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPT-PDVPSKSKD 594
P TKP PD K EP+ + PKP +E + KPK + P S+++D
Sbjct: 173 PSSTKPAPDAK--------EPEFSSPKPKPAKSEPVKQSKPKATETARPSSFSRNED 221
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 433 ETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDT 597
+T P + A K E K+A+ + + KP + KP PD+ ++ K++
Sbjct: 117 DTSAAPPEGGSAGPKKDEVKTADADAAKDLSTPQDSSKPIEEKPMPDLGAEQKES 171
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 427 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTPA 603
P E KP PD + A++K P S +P P +PE KP P K A
Sbjct: 155 PIEEKPMPD--LGAEQKESAPSSTKPAPD----AKEPEFSSPKPKPAKSEPVKQSKPKA 207
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +1
Query: 448 PDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTP 600
P D K E+ P P + P+ +KP K+ + + P +K P
Sbjct: 149 PQDSSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKPAKSEP 199
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = +1
Query: 427 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTP 600
P P P V A P+P A P P P+ + P KP P VPS + P
Sbjct: 1088 PSGIPPVPKPSVAAPP-VPKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 430 EETKPKPDDKVKA-DEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTP 600
EE K +D D + + E K EE+P +P+ + P++ +DTP
Sbjct: 468 EEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTP 525
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 427 PEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPT--PDVPSKSKDTP 600
P+ + P + + + P P + P +P + P K P+ P VP+ S + P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074
Query: 601 A 603
+
Sbjct: 1075 S 1075
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 481 PEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTP 600
P+P A P P VP+ + P KP P PS + P
Sbjct: 1124 PKPSVAAP-PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Frame = +1
Query: 427 PEETKPKPDDKVKADEKTPEPKSAEPKPTD------VPAESKPEEKPKDRKPTPDVPSKS 588
P P P V A P P A P P VPA S PK P VP+ S
Sbjct: 1117 PSGAPPVPKPSVAAPP-VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPS 1175
Query: 589 KDTP 600
P
Sbjct: 1176 SGIP 1179
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 430 EETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDV-PSK 585
EET+ P ++ K P AEP + +KP E ++ P V P+K
Sbjct: 426 EETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPNK 478
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 469 DEKTPEPKSAEPKPTDVPAESKPEEKPKDR---KPTPDVPSKSKDTPA*SERSSH 624
+EK PK E +P P ES E+KP KPT SK ++ + +H
Sbjct: 422 EEKVETPKP-EAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNH 475
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 445 KPDDKVKADEKTPEPKSAEPKPT-DVPAESKPEEKPKDRKPTPDVP 579
+P+ +++D ++ P E + D+ P +KP+P+VP
Sbjct: 205 QPNGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = +1
Query: 424 HPEETKP-KPDD----KVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPS 582
HP T P +P ++ A P P S P P+ P + P P P PS
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 338 KRNPIRLQXXXXXXXXXXXKKHQQKLRPNTLKRQNQNQMIKSKQMKRHLNLNLQ-NQSLP 514
K+ P++ + KK Q+ L+P+T +NQ +K+K+ K N+NLQ + P
Sbjct: 480 KKTPVQRRKDGKFAKSTKRKK-QKSLKPDT---ENQESSVKNKKAK--SNVNLQYSPKTP 533
Query: 515 TFLLNLNQKRSPRIGS 562
+N + P I +
Sbjct: 534 ICKINDETLKPPTIAN 549
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 484 EPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSK 591
+P S PTD+ A+SK EKP+ R + S +K
Sbjct: 119 KPTSVSLSPTDLQAQSKLIEKPRRRSASNATGSLNK 154
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 515 SVGFGSADLGSGVFSSALTLSSGFGFVSSG 426
S GFGS G G+F S+ T ++ F +SG
Sbjct: 137 STGFGSQGTGGGLFGSSTTPATTNAFGTSG 166
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 448 PDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDTPA 603
P VKA T PKP VP + P + + T +V + ++ + A
Sbjct: 209 PSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNALRSTANVINNTRQSTA 260
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 1390 PXXXPPRXXGAGXXPPPPP 1334
P PP GAG PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 1378 PPRXXGAGXXPPPPPTXXXGAXSXPXXP 1295
PP G PPPPP GA P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 436 TKPKPDDKVKADEKTPEPKSAEPKPTD 516
+K DD++K D+KT E K A P D
Sbjct: 835 SKGSNDDEMKIDKKTTEEKEATPMEMD 861
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 705 SYRSIGFXWRFXTSMGLSGEADFSEXSVGTSFTLGRRVFR-FRW 577
S+ S+ F W F +G+ S V + T+ +FR F W
Sbjct: 343 SFESLSFAWGFGCMLGVYIAGGISGGHVNPAVTISLAIFRKFPW 386
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 433 ETKPKPDDKVKADEKTPEPKSAEPKPTDVPAES 531
E PKPD+ + +K P P VP+E+
Sbjct: 1030 EESPKPDEYIDQKDKVQSPLLNGKSPVGVPSEA 1062
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 424 HPEETKPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEK-PKDRKPTPDVPSKSKD 594
+P KPK K K+ + A + + A SK E P KP P PS D
Sbjct: 80 YPPPEKPK---KAHGKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESD 134
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 466 ADEKTPEPKSAEPKPTDVPAE-SKPEEKPKDRKPTPDVPSKSK 591
ADEK + ++ +P P +V E +PEEK P+ P K +
Sbjct: 85 ADEKEEKKETIQP-PEEVKTEPPQPEEKEGKEAKEPEEPPKEE 126
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 395 KKHQQKLRPNT--LKRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLNQKRSPRI 556
++H+ P+ K N + K+ +RH ++ PT + NLN R+P+I
Sbjct: 456 RQHKTHAAPSKELTKESLSNDQLSVKEKRRH------HKKAPTLIQNLNSPRTPKI 505
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 439 KPKPDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKS 588
KP ++ KA + + E K + P + A E+K DRK + P K+
Sbjct: 187 KPASNNS-KAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKT 235
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 427 PEETK-PKPDDKVKADEKTPEPKSAEPKPTD--VPAESKPEEKPKDRKPTPDVPSKSKDT 597
P ++K P+ ++ K E S + + D + SK EEKP P V ++ K+T
Sbjct: 358 PADSKEPRKEEAEKPVTSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKET 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,765
Number of Sequences: 5004
Number of extensions: 55189
Number of successful extensions: 281
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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