Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C01_e3_05.seq
         (1568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    29   0.37 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   3.4  
AJ438610-2|CAD27474.1|   92|Anopheles gambiae hypothetical prote...    25   6.0  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 448 PDDKVKADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKPTPDVPSKSKDT 597
           P  +  +  +  EP  A P   D  ++    ++PKD  P P   S S  T
Sbjct: 643 PPPRTNSQSQASEPTPALPPRADRDSKPSSRDRPKDLPPPPIPASGSSST 692


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 433 ETKPKPDDKVKADEKTPEPKSAEPKPTDVP 522
           E++ +   K +A+ KTPE  S +P   +VP
Sbjct: 616 ESRSRSTSKQRANAKTPETPSDQPLIKEVP 645


>AJ438610-2|CAD27474.1|   92|Anopheles gambiae hypothetical protein
           protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 466 ADEKTPEPKSAEPKPTDVPAESKPEEKPKDRKP 564
           ADE +PE K  + +PT+ P   + + +    KP
Sbjct: 56  ADEPSPERKVQKLEPTEAPCYIRKDGRAVHPKP 88


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,773
Number of Sequences: 2352
Number of extensions: 15262
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 184909725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)