Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C01_e3_05.seq
         (1568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.77 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   5.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 410 KLRPNTLKRQNQNQMIKSKQMKRHLNLNLQNQSLPTFLLNLNQKRSPRIGSPHLMFHLNL 589
           ++ PN LK  +++Q+IK        +   Q  + P F   L  K     G+   M   N+
Sbjct: 474 QISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAF---LTIKEWIERGTTKSMEAANI 530

Query: 590 KTRRPKVNEVPTEXSEKS 643
            ++ PK    PT+   +S
Sbjct: 531 MSKLPKTVRTPTDSYIRS 548


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 505 KPTDVPAESKPEEKPKDRKP 564
           +PT +  E+KPE +P + +P
Sbjct: 27  RPTRLRREAKPEAEPGNNRP 46


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 461 TLSSGFGFVSSGCL 420
           T+ +GFG + SGC+
Sbjct: 43  TMQTGFGMLESGCV 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,345
Number of Sequences: 438
Number of extensions: 4226
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55147125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)