Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B12_e90_04.seq
         (1494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   143   3e-36
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   3.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  143 bits (346), Expect = 3e-36
 Identities = 82/216 (37%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
 Frame = +3

Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQI 272
           +  G++L+  AQTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI
Sbjct: 192 ILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQI 251

Query: 273 QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 452
                +F  +S V+   ++GG     Q   +  G  I++ATPGRL DF+ +G  +     
Sbjct: 252 ADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLK 311

Query: 453 YLVLDEADRMLDMGFEPQIRKIID-QIRP---DRQTLMWSATWPKEVRKLAEDYLXDYVQ 620
           Y VLDEADRMLDMGF   + +++  Q  P   +RQTLM+SAT+P+EV++LA  +L +Y+ 
Sbjct: 312 YFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIF 371

Query: 621 INIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQE 728
           I +G +  SA  ++ Q      + +K +KL  +L++
Sbjct: 372 IAVGIVG-SACTDVEQKFFQVSKFDKRSKLVSILEK 406



 Score = 33.5 bits (73), Expect = 0.004
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 746 PWGKTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEG 898
           P  +T+IFVETKR A             +  +H D++  +  K   +FK G
Sbjct: 408 PNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTG 458


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 265  NKYSRLLQNLAIHLMFVIHV 324
            +KYSRL+ N A    F+ HV
Sbjct: 1484 DKYSRLVNNPAARARFIKHV 1503



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 265  NKYSRLLQNLAIHLMFVIHV 324
            +KYSRL+ N +    F+ HV
Sbjct: 1909 DKYSRLVNNPSARRRFIAHV 1928



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 265  NKYSRLLQNLAIHLMFVIHV 324
            NKYSRL+ +      F+ HV
Sbjct: 2407 NKYSRLVNDPQARAAFIAHV 2426


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,323
Number of Sequences: 336
Number of extensions: 6235
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 44759725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)