Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B12_e90_04.seq
(1494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 299 5e-82
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 217 3e-57
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 169 9e-43
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 164 3e-41
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 161 3e-40
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 128 3e-30
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 124 4e-29
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 116 8e-27
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 112 1e-25
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 111 2e-25
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 109 1e-24
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 107 3e-24
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 105 2e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 104 3e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 103 5e-23
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 101 3e-22
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 93 7e-20
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 91 3e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 91 5e-19
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 90 6e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 87 6e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 81 5e-16
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 73 1e-13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 40 7e-04
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 40 7e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 32 0.23
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 31 0.41
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 1.7
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 2.9
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 28 3.8
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 5.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 299 bits (735), Expect = 5e-82
Identities = 139/211 (65%), Positives = 173/211 (81%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G+++VG++ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ ++F
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G SS +RNTCV+GG P+ Q RDL RGVEI IATPGRL+D L+ TNL+R TYLVLDEA
Sbjct: 219 GKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEA 278
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
DRMLDMGFEPQIRKI+DQIRPDRQT+M+SATWPKEV++LA DYL DY+Q+ +GSL L+A+
Sbjct: 279 DRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAAS 338
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQD 746
HNI QIV+V +K +L ++E+ +++D
Sbjct: 339 HNIKQIVEVVDNADKRARLGKDIEEVLKDRD 369
Score = 33.1 bits (72), Expect = 0.10
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 755 KTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
K +IF TKR A GWPA+ +H DK + F+ G+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 419
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 217 bits (530), Expect = 3e-57
Identities = 106/217 (48%), Positives = 150/217 (69%), Gaps = 3/217 (1%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
++ G++++GVA+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCT 452
F +R C +GGAP ++Q DL+RG EIV+ TPGR+ID L TNL RCT
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCT 570
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIG 632
YLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++SAT+P+ + LA L V+I +G
Sbjct: 571 YLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVG 630
Query: 633 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ A+ + QIV+V E K ++L LL E+ NQ
Sbjct: 631 GRSVVAS-EVEQIVEVRPEESKFSRLLELLGELYNNQ 666
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 169 bits (411), Expect = 9e-43
Identities = 95/215 (44%), Positives = 137/215 (63%), Gaps = 7/215 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
L G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q +
Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENL 256
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
+ + ++ V+GGAPK EQAR + ++I TPGRL+D + G+ + + YLVL
Sbjct: 257 NSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVL 315
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPD------RQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
DEADRMLD GFE IR II PD RQT+ +SATWP+ VR LA +L D V+I
Sbjct: 316 DEADRMLDTGFEQDIRNIISH-TPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKIT 374
Query: 627 IGSLQLSANHNILQIVDVCQE-HEKENKLNVLLQE 728
IGS +L+A+ NI QIV++ + KE L+ LL++
Sbjct: 375 IGSDELAASQNITQIVEILDDPRSKERMLDNLLRK 409
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 164 bits (398), Expect = 3e-41
Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 17/309 (5%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTR 254
G++L+ AQTGSGKT ++ P + + + P P+ + G P L+LAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 255 ELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT 434
EL QI + + +F S+VR V+GGA R Q R +++G +++ ATPGRL+D +++G
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRI 325
Query: 435 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSATWPKEVRKLAEDY 602
+L +LVLDEADRMLDMGFEPQIR I++ +RQTLM+SAT+P++++ LA D+
Sbjct: 326 SLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDF 385
Query: 603 LXDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLK 782
L DYV +++G + S + NI Q V ++ EK + L +L + P L ++ K
Sbjct: 386 LKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLIFVETK 440
Query: 783 EKRXTXPEISDDMDGQLCACTXTNTARKG*SXXPILKRVVSSILVATDVGCXRS*CGMGS 962
T + + + + T R+ + + +SI+VAT V R
Sbjct: 441 RMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAV-ASRGLDIPNV 499
Query: 963 NFXINFDXP 989
IN+D P
Sbjct: 500 THVINYDLP 508
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 161 bits (390), Expect = 3e-40
Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 22/229 (9%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 275
L Q K+L+G+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 276 QVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTY 455
++F R V GG EQ+ + +G IV+ATPGRL+D LE+ L +CTY
Sbjct: 343 VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTY 402
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPD-------------------RQTLMWSATWPKE 578
+V+DEADRMLDMGFE + KI+ + RQT+M+SAT P
Sbjct: 403 VVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPR 462
Query: 579 VRKLAEDYLXDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 725
V LA+ YL + V + IG++ + + ++ + + +K ++ +L+
Sbjct: 463 VANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILE 511
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 761 IIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKK 865
IIFV KR GW AV +H K ++
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQ 554
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 128 bits (308), Expect = 3e-30
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 3/211 (1%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
++++G+AQTGSGKT A+ LP I + NN P A+VLAPTRELA QI +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAI 137
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLD 467
G S VR+ + GG QA L + +++ TPGRL+D LE KG + L+ YL++D
Sbjct: 138 GGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMD 196
Query: 468 EADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLS 647
EADR+LDM F P I KI+ I +R+TL++SAT +V KL L V++ + S + S
Sbjct: 197 EADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS-KFS 255
Query: 648 ANHNILQIVDVCQEHEKENKLNVLLQEIGQN 740
++Q K+ L L+ E+ N
Sbjct: 256 TVDTLIQRYLFFPFKHKDTYLVYLVNELAGN 286
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 124 bits (298), Expect = 4e-29
Identities = 70/209 (33%), Positives = 116/209 (55%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
L +G+++VG+A+TGSGKT A+++P I H+ + AL+L+P RELA Q +V
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVV 159
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
+F + +R+ + GG EQ L +IV+ATPGR + + L Y+V
Sbjct: 160 KDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVF 219
Query: 465 DEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL 644
DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ + A+ L D V + + ++
Sbjct: 220 DEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL-DVES 278
Query: 645 SANHNILQIVDVCQEHEKENKLNVLLQEI 731
+ ++ + E+E L +LQ+I
Sbjct: 279 KVSADLQSAFFSVKTAEREAALLCILQDI 307
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 116 bits (279), Expect = 8e-27
Identities = 78/185 (42%), Positives = 116/185 (62%), Gaps = 9/185 (4%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 278
L G++++G A+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI
Sbjct: 123 LLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFG 179
Query: 279 VASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCT 452
VA E + V GGA +R +A L +GV +++ATPGRL+D L+ KG +
Sbjct: 180 VAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLR 238
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSATWPKEVRKLAEDYLXD---YV 617
LV+DEADR+L++GFE ++R+I+ +I P +RQTL++SAT +V LA L YV
Sbjct: 239 SLVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSATQTTKVEDLARISLKPGPLYV 297
Query: 618 QINIG 632
++ G
Sbjct: 298 NVDSG 302
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 112 bits (269), Expect = 1e-25
Identities = 64/210 (30%), Positives = 107/210 (50%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++ A+ G+GKT A+++P++ ++ + + L+L PTRELA Q QV
Sbjct: 81 GRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTL 135
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G V+ GG R+ L V IV+ TPGR++D KG + CT V+DEA
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEA 195
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
D++L F P I +++ +RQ ++SAT+P V+ + +L +IN+ +
Sbjct: 196 DKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL--MDELTL 253
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ Q E +K + LN L ++ NQ
Sbjct: 254 RGVTQYYAFVDESQKVHCLNTLFSKLQINQ 283
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 111 bits (267), Expect = 2e-25
Identities = 69/178 (38%), Positives = 102/178 (57%), Gaps = 19/178 (10%)
Frame = +3
Query: 135 AQTGSGKTLAYILPAIVHINNQPPI--RRGDGPIALVLAPTRELAQQIQQVASEFGN--- 299
AQTGSGKTLAY+LP + + P R G A+++APTREL QQI VA++ N
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPL 244
Query: 300 SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEAD 476
S ++ + V GG K+ + + +GV I+I TPGRL D LE ++ + ++VLDE D
Sbjct: 245 SHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGD 304
Query: 477 RMLDMGFEPQIRKIIDQIR------------PDRQ-TLMWSATWPKEVRKLAEDYLXD 611
R++DMGFE + KI+ + P R+ T++ SAT V++L++ L D
Sbjct: 305 RLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKD 362
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 109 bits (262), Expect = 1e-24
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 1/195 (0%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
GK++VG A TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA++
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKI 353
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDE 470
+ + + GG + Q ++L + +IVIATPGR ID + ++ +V+DE
Sbjct: 354 ASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDE 413
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSA 650
ADRML+ GF ++ +II RQT+++SAT +V L L V++ + + + +A
Sbjct: 414 ADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTA 473
Query: 651 NHNILQIVDVCQEHE 695
+ V V + E
Sbjct: 474 KLLTQEFVRVRPQRE 488
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 107 bits (258), Expect = 3e-24
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
S +G++++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q +
Sbjct: 72 SALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFET 130
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYL 458
+ G + GG +E+ L R + I++ TPGRL+ +++ + L
Sbjct: 131 LVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQML 189
Query: 459 VLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLA 593
+LDEADR+LDMGF + I+ + RQT+++SAT K V+ LA
Sbjct: 190 ILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 105 bits (251), Expect = 2e-23
Identities = 59/177 (33%), Positives = 98/177 (55%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
++++ AQ+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALG 111
Query: 297 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 476
+ V GG R+ L+ GV +V+ TPGR+ D +++ VLDEAD
Sbjct: 112 DLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEAD 171
Query: 477 RMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLS 647
ML GF+ QI I + P Q ++ SAT P++V ++ ++ D ++I + +L+
Sbjct: 172 EMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELT 228
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 104 bits (250), Expect = 3e-23
Identities = 62/168 (36%), Positives = 94/168 (55%), Gaps = 6/168 (3%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
+ +G+N +G A+TGSGKT A+ LP I + P G AL+L PTRELA QI +
Sbjct: 41 ILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQF 95
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCT 452
+ G + +++ + GG Q+ DL + +V+ATPGRL D + E+ L+R
Sbjct: 96 AALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIK 155
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSATWPKEVRKL 590
+LV+DEADR+L F + + DRQTL+++AT +R+L
Sbjct: 156 FLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 103 bits (248), Expect = 5e-23
Identities = 93/302 (30%), Positives = 147/302 (48%), Gaps = 4/302 (1%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
+N++G +Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V +E G
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMG 208
Query: 297 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 476
+ V+ FG K + + +IVI TPG ++D +++ + + VLDEAD
Sbjct: 209 KYTEVKTA--FG--IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 264
Query: 477 RMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSAN 653
MLD G Q +I + + Q +++SAT+ + V K AE + + +I + + +LS
Sbjct: 265 NMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV- 323
Query: 654 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXTXPEISDDM--DG 827
I Q+ CQ +E+K NVL++ G G ++ +K+ T EI+ M DG
Sbjct: 324 EGIKQLYMDCQ--SEEHKYNVLVELYGL-LTIGQSIIFC----KKKDTAEEIARRMTADG 376
Query: 828 QLCACTXTNTARKG*SXXPILKRV-VSSILVATDVGCXRS*CGMGSNFXINFDXPXXPWG 1004
AC N RV S +LV T+V R N +N+D P G
Sbjct: 377 HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNV-IARGIDVSQVNLVVNYDMPLDQAG 435
Query: 1005 *P 1010
P
Sbjct: 436 RP 437
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 101 bits (242), Expect = 3e-22
Identities = 58/179 (32%), Positives = 96/179 (53%)
Frame = +3
Query: 87 SRXGQSLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 266
SR +C+G++++ AQ+G+GKT + + + I+ +R AL+L+PTRELA
Sbjct: 49 SRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAV 103
Query: 267 QIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR 446
QIQ V G+ V+ GG + L+ G +V TPGR+ D + + +
Sbjct: 104 QIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRN 163
Query: 447 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++ + + V+I
Sbjct: 164 VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 93.5 bits (222), Expect = 7e-20
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQVAS 287
+GK+LV A+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 50 EGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLE 109
Query: 288 EFGN--SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 461
+ S ++R V + Q L +IVIATP R + + G L + +LV
Sbjct: 110 KLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLV 169
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQ 641
+DEAD ML G+ ++ + + Q+ + SAT K + L + + + + +
Sbjct: 170 IDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE 229
Query: 642 LSANHNILQIVDVCQEHEKENKLNVLLQ 725
A+ + Q V C E +K +LL+
Sbjct: 230 --ASGKLTQYVVKCSEQDKFLLAYILLK 255
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 91.5 bits (217), Expect = 3e-19
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
+ K+LV A TGSGKTLAY+LP + + G G AL++APTRELA QI V E
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Query: 291 F---------GNSSYVRNTCVFG-GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 440
G V + + G G + A E+ +VI TPGRL + L ++
Sbjct: 95 LLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEMLSHISS-- 152
Query: 441 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 566
+ L+LDEAD ++DMGF+ ++ II Q+ R+T ++SAT
Sbjct: 153 KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 90.6 bits (215), Expect = 5e-19
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQVAS 287
G +++G A TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQHFE 213
Query: 288 EFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLV 461
S +R + GG ++Q R L + +V+ATPGRL + + T N ++ LV
Sbjct: 214 LIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLV 273
Query: 462 LDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSATWPKEVRK 587
LDEADR+L ++ K+++ + RQT ++SAT+ + +++
Sbjct: 274 LDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQ 319
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 90.2 bits (214), Expect = 6e-19
Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 4/174 (2%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
+N V A+TG+GKTLA++L A + P +++L+PTRELA QI + A +
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT 136
Query: 297 NSSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDE 470
+ +R + GG K + + RG ++IATPGRL D L+ T +LDE
Sbjct: 137 YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDE 196
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVRKLAEDYL-XDYVQIN 626
ADR++DMGF I I + + + + L +SAT P +V + L D+ IN
Sbjct: 197 ADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 87.0 bits (206), Expect = 6e-18
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 6/216 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASE 290
G +++ A++G GKT ++L + I P+ DG ++ LVL TRELA QI+ +
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYAR 141
Query: 291 FGNS-SYVRNTCVFGGAPKR---EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
F VR +GG + E +D + IV+ATPGRL + + + +
Sbjct: 142 FSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHF 201
Query: 459 VLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
VLDE D++L+ + I+++ P +Q +M+SAT E+R + + ++ + ++I +
Sbjct: 202 VLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDD 261
Query: 636 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
H + Q +E K K+N LL + NQ
Sbjct: 262 ETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQ 297
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 80.6 bits (190), Expect = 5e-16
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASE-- 290
++L+ A TGSGKT+AY+ P + + P G A+++APTREL +QI + A +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQAEKLS 139
Query: 291 FGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
FG S + +E+A L ++ I TP RL+ ++ G + ++ + V+DE
Sbjct: 140 FGTSLKIIELSK-SNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDE 197
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVRKLAEDYLXDYVQINIG 632
ADR+ + GF Q I+ ++SAT P V +LA+ D ++I +G
Sbjct: 198 ADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVG 252
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 72.9 bits (171), Expect = 1e-13
Identities = 44/153 (28%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Frame = +3
Query: 90 RXGQSLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 269
R G G ++ A TGSGKTL+Y++P + ++++ R +V+ PTREL Q
Sbjct: 165 RHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQ 220
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATPGRLIDFLEKGTT 434
+ + + + + ++ G R + L E ++++++TPGRL+D + +
Sbjct: 221 VAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDES 280
Query: 435 -NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 530
+LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 281 FSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
SL NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLR 1260
Query: 282 ASEFG 296
+E G
Sbjct: 1261 VNEKG 1265
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 40.3 bits (90), Expect = 7e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 281
SL NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1202 SLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDMMLR 1260
Query: 282 ASEFG 296
+E G
Sbjct: 1261 VNEKG 1265
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 31.9 bits (69), Expect = 0.23
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 357 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 533
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 534 PDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQ 641
Q T+P +V L + L Y Q+ + Q
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQ 222
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 31.1 bits (67), Expect = 0.41
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +3
Query: 123 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNS 302
L+ VA+TGSGKT LP +H + +G+ I P R A VA+
Sbjct: 437 LLIVAETGSGKTTQ--LPQFLH---EAGYTKGNKKICCT-QPRRVAA---MSVAARVAKE 487
Query: 303 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI-DFLEKGTTNLQRCTYLVLDEA-D 476
VR G + + E A E+ V I T G L+ +FL + +L + +++DEA +
Sbjct: 488 MDVRLGQEVGYSIRFENATS-EKTV-IKYLTDGMLLREFLTE--PDLASYSVIIIDEAHE 543
Query: 477 RMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 566
R L + K I + RPD + L+ SAT
Sbjct: 544 RTLHTDILFGLVKDIARFRPDLKVLISSAT 573
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 1.7
Identities = 27/121 (22%), Positives = 52/121 (42%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
+N++ TG GKT + A+V +N +R + +APT+ L Q + +
Sbjct: 87 ENVLVALPTGLGKTF---IAAVVMMNY---LRWFPKSYIVFMAPTKPLVTQQMEACYKIT 140
Query: 297 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 476
+ + G P + + + TP +++ ++ G + R + LV+DEA
Sbjct: 141 GIPKSQTAELSGHVPVTTR-NQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199
Query: 477 R 479
R
Sbjct: 200 R 200
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 266
GK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 958 PIPHQDLXQPTSVATSILETTLFKIGKXLHPFLAVFVXVHAHSWPSIS 815
P+ + +L + +I E +K+ K PFL V HA WPS++
Sbjct: 10 PLENNELNAEIDLQKTIQEE--YKLWKQNVPFLYDLVITHALEWPSLT 55
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 449
A +FG+ S + C G KR RD+ G + ++ PG +D L K +L
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274
Query: 450 TYLVLDE 470
TY V E
Sbjct: 275 TYQVSGE 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,023,375
Number of Sequences: 5004
Number of extensions: 95587
Number of successful extensions: 307
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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