Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_B12_e90_04.seq
(1494 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 287 1e-77
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 169 4e-42
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 167 2e-41
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 7e-38
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 1e-36
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 1e-32
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 130 2e-30
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 128 1e-29
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 1e-27
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 121 1e-27
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 5e-27
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 116 4e-26
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 116 4e-26
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 113 3e-25
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 1e-24
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 96 6e-20
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 88 2e-17
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 83 7e-16
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 82 1e-15
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 80 5e-15
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 79 1e-14
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 73 8e-13
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 72 1e-12
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 72 1e-12
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 4e-12
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 2e-11
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 4e-11
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 63 5e-10
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 5e-10
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6) 60 4e-09
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 58 2e-08
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 56 6e-08
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 52 1e-06
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 43 5e-04
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 39 0.012
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.012
SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.083
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 34 0.34
SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.59
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 31 1.8
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 31 2.4
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) 29 7.2
SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.2
SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0) 29 9.6
SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 9.6
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 287 bits (705), Expect = 1e-77
Identities = 133/182 (73%), Positives = 153/182 (84%)
Frame = +3
Query: 165 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPK 344
+ILP IVHIN+QP ++ GDGPI LVL PTRELAQQ+Q+VA G +R+TC++GGAPK
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPK 172
Query: 345 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 524
Q R+LERGVEI IATPGRLID LE TNL+RCTYLVLDEADRMLDMGFEPQIR IID
Sbjct: 173 GPQIRELERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIID 232
Query: 525 QIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQIVDVCQEHEKEN 704
QIRPDRQTLMWSATWPKEV+ LA D+L DYV I +GSL L+ANH ILQIVDVC++HEKE+
Sbjct: 233 QIRPDRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEH 292
Query: 705 KL 710
+
Sbjct: 293 NV 294
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 169 bits (412), Expect = 4e-42
Identities = 87/218 (39%), Positives = 137/218 (62%), Gaps = 8/218 (3%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINN----QPPIRRGDGPIALVLAPTRELAQQIQQV 281
G++++ AQTGSGKT A++LP + + N P A+ +APTRELA QI
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLE 807
Query: 282 ASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 461
A +F + + +R +GG Q R L+ G +++ TPGRL DF+EKG +L+ +L+
Sbjct: 808 ARKFAHGTMLRPVVCYGGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLI 867
Query: 462 LDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWPKEVRKLAEDYLXDYVQINI 629
LDEADRMLDMGFEP IR+I++ + + +RQTLM+SAT+P+E+++LA D+L DY+ + +
Sbjct: 868 LDEADRMLDMGFEPAIRRIVESMGMPDKSERQTLMFSATFPEEIQRLAGDFLNDYLFLTV 927
Query: 630 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
G + +I Q V ++EK ++L +L + G ++
Sbjct: 928 GRVG-GTTSDIEQTVIEVTDNEKRDRLTQILGDAGTDR 964
Score = 35.5 bits (78), Expect = 0.11
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 755 KTIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
+T++FVE+KR A G+P +H D+ ++ + +F++GR
Sbjct: 964 RTLVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREEALDDFRKGR 1012
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 167 bits (407), Expect = 2e-41
Identities = 87/175 (49%), Positives = 114/175 (65%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++G+A+TGSGKT A++ PA+VHI +QP ++ GDGPI L+ APTREL QQI A F
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRF 613
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G + + VFGG K EQ++ L+ G EIV+ATPGRLID ++ TNL R TYLV DEA
Sbjct: 614 GKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEA 673
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSL 638
DRM DMGF L++SAT+ K+V L D L D V++ IG L
Sbjct: 674 DRMFDMGF----------------ALLFSATFKKKVEHLCRDILVDPVRVVIGEL 712
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 155 bits (377), Expect = 7e-38
Identities = 88/214 (41%), Positives = 128/214 (59%), Gaps = 5/214 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++L+ AQTGSGKT AY+LP + + Q P+AL +APTRELA+QI A +F
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF 575
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
+ + ++ +GG QA LERG ++ TPGRL DF+ + L +L+LDEA
Sbjct: 576 SDHTPIKVCVCYGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEA 635
Query: 474 DRMLDMGFEPQIRKIIDQ----IRPDRQTLMWSATWPKEVRKLAEDYLX-DYVQINIGSL 638
DRMLD+GF P I K+I++ + RQTLM+SAT+P E++ LA +L DY+ + +G +
Sbjct: 636 DRMLDLGFGPDIHKLIEESNMTAKESRQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRV 695
Query: 639 QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQN 740
N +I Q V EK +KL+ +L G+N
Sbjct: 696 G-GTNLDITQHVITVNGSEKRDKLHEILSATGEN 728
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 151 bits (366), Expect = 1e-36
Identities = 89/200 (44%), Positives = 115/200 (57%), Gaps = 15/200 (7%)
Frame = +3
Query: 153 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFG 332
K +Y P + P I G IA+V+ PTRELA QI + +F + +R CV+G
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYG 180
Query: 333 GAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEP 503
G EQ +L+RG EI++ TPGR+ID L TN QRCTYLVLDEADRM DMGFEP
Sbjct: 181 GTGISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEP 240
Query: 504 QIRK--------IIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL---SA 650
QI K IID IRPDRQT+M+SAT+P+++ LA L ++I +G +
Sbjct: 241 QITKIRYPKVMRIIDCIRPDRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDV 300
Query: 651 NHNI-LQIVDVCQEHEKENK 707
N+ L + D E E E K
Sbjct: 301 EQNVALGLQDSDDEAEAEEK 320
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 138 bits (333), Expect = 1e-32
Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 4/213 (1%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
++L+ AQTGSGKT A+++P + I + P P AP +F
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP------P-----APP------------DFS 949
Query: 297 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 476
S R V+GGA Q R+L+R +++ATPGRL+D +++G L +LVLDEAD
Sbjct: 950 YRSLCRPCVVYGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEAD 1009
Query: 477 RMLDMGFEPQIRKIIDQ-IRPD---RQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL 644
RMLDMGFEPQIR+I+DQ P RQTLM+SAT+PKE++ LA D+L +Y+ + +G +
Sbjct: 1010 RMLDMGFEPQIRRIVDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVG- 1068
Query: 645 SANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
S + NI Q V E +K + L LL G Q
Sbjct: 1069 STSENITQKVVWVDEFDKRSFLLDLLNASGPQQ 1101
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 130 bits (315), Expect = 2e-30
Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 25/224 (11%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++G+A+TGSGKTLAY LP + + + P GD P+AL+L PTREL QQ+ SE
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEM 168
Query: 294 ------------GNSSYVRNT----------CVFGGAPKREQARDLERGVEIVIATPGRL 407
N S + +T V GG P Q L G ++V+ATPGRL
Sbjct: 169 LDVIRCPGNPGPSNQSVIYDTQQFTARYKAVAVCGGVPVSTQTIALREGADVVVATPGRL 228
Query: 408 IDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD---RQTLMWSATWPKE 578
+D L + TYLV+DE DRML MG E Q+RKI+ RQTL+WSAT P+
Sbjct: 229 LD--------LYKITYLVMDEPDRMLGMGMEEQLRKIVGLATGTSRARQTLLWSATLPES 280
Query: 579 VRKLAEDYLXDYVQINIGSLQLSANHNILQIVDVCQEHEKENKL 710
+ +LA + + + I +G L A ++ Q V ++K KL
Sbjct: 281 LERLARSAVLNPITIQVGPGGLIA-PSVQQNVVFLYHYQKPQKL 323
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 128 bits (308), Expect = 1e-29
Identities = 67/171 (39%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVASE 290
G++++G A+TG+GKTL++ LP + + + + +RG P LV+APTRELA+Q V +E
Sbjct: 110 GEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQ---VGNE 166
Query: 291 FGN-SSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLD 467
F N S + C++GG P Q + G+++++ TPGR++DF+ +GT +L + ++VLD
Sbjct: 167 FENLKSNLEVYCIYGGMPYEPQENAINSGLDVLVGTPGRILDFMRQGTLDLSKLKHVVLD 226
Query: 468 EADRMLDMGFEPQIRKII----DQIRPDR-QTLMWSATWPKEVRKLAEDYL 605
E DRMLDMGF + +++ + R D+ QTL++SAT P A+ Y+
Sbjct: 227 EVDRMLDMGFAESVEEVLAASYAEDREDKPQTLLFSATLPPWAVNTAKKYM 277
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 122 bits (293), Expect = 1e-27
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-DGPIALVLAPTRELAQQIQQVASEF 293
++++ AQ+G+GKT + + + I+ + G D ALVLAPTRELAQQIQ+V
Sbjct: 123 RDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLAL 182
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G+ +V+ GG RE LE GV +V+ TPGR+ D + +G N + VLDEA
Sbjct: 183 GDYMHVKCHACIGGTNVREDRMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEA 242
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
D ML GF+ QI + ++ Q ++ SAT P +V ++ ++ D V+I
Sbjct: 243 DEMLSRGFKDQIYDVFTRLPTSVQVVLLSATMPTDVLEVTNKFMRDVVRI 292
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 121 bits (292), Expect = 1e-27
Identities = 75/172 (43%), Positives = 106/172 (61%), Gaps = 4/172 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++G A+TGSGKTLA+++P I + Q DG ALV++PTRELA Q +V +
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSM-DGLGALVISPTRELAYQTFEVLVKI 145
Query: 294 GNSSYVRNTCVFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT---YLV 461
GN + + GG K EQ R ++ IV+ TPGRL+ +++ T N CT LV
Sbjct: 146 GNKHDLSAGLIIGGKDLKNEQKRIMK--TNIVVCTPGRLLQHMDE-TPNFD-CTSLQILV 201
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYV 617
LDEADR+LDMGF P + II+ + +RQTL++SAT + V+ LA L YV
Sbjct: 202 LDEADRILDMGFAPTLNAIIENLPSERQTLLYSATQTRSVKDLARLSLQSYV 253
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 119 bits (287), Expect = 5e-27
Identities = 64/165 (38%), Positives = 106/165 (64%), Gaps = 1/165 (0%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
L +G++L+G A+TGSGKTLA+++P +V + + + +G ++++PTREL+ Q VA
Sbjct: 606 LLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVA 664
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLV 461
+ + GG ++ +A L++GV ++IATPGRL+D L+ L + LV
Sbjct: 665 RDLLKHHNFTYGIIMGGVNRKAEAERLQKGVNLLIATPGRLLDHLQNTQGFLYKNLQCLV 724
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
+DEADR+L++GFE ++R+II + RQT+++SAT K V LA+
Sbjct: 725 IDEADRILEIGFEEEMRQIIRILPSKRQTVLFSATQTKNVEDLAK 769
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 116 bits (280), Expect = 4e-26
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 7/217 (3%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++ A+ G+GKT AY++P + + + ALVL PTRELA Q Q+ E
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIEL 138
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERG-------VEIVIATPGRLIDFLEKGTTNLQRCT 452
G + GG ++ L V +++ATPGR++D ++K ++ +C
Sbjct: 139 GKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQ 198
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIG 632
LV+DEAD++L M F+ + +II + +RQ L++SAT+P VR E +L +IN+
Sbjct: 199 MLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDFKEKHLRKPYEINL- 257
Query: 633 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ H + Q +E +K + LN L Q++ NQ
Sbjct: 258 -MDELTLHGVTQYYAFVEEKQKVHCLNTLFQKLQINQ 293
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 116 bits (280), Expect = 4e-26
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 7/217 (3%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G++++ A+ G+GKT AY++P + + + ALVL PTRELA Q Q+ E
Sbjct: 84 GRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQ-----ALVLVPTRELALQTSQICIEL 138
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERG-------VEIVIATPGRLIDFLEKGTTNLQRCT 452
G + GG ++ L V +++ATPGR++D ++K ++ +C
Sbjct: 139 GKHMGAQVMVTTGGTSLKDDILRLYNKDIFVHVVVHVIVATPGRVLDLMKKKLADMSKCQ 198
Query: 453 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIG 632
LV+DEAD++L M F+ + +II + +RQ L++SAT+P VR E +L +IN+
Sbjct: 199 MLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDFKEKHLRKPYEINL- 257
Query: 633 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQ 743
+ H + Q +E +K + LN L Q++ NQ
Sbjct: 258 -MDELTLHGVTQYYAFVEEKQKVHCLNTLFQKLQINQ 293
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 113 bits (272), Expect = 3e-25
Identities = 64/155 (41%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Frame = +3
Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 284
+ QG++ +G A+TGSGKT A+ LP + + + P G A+VL PTRELA QI
Sbjct: 41 ILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPY-----GIFAVVLTPTRELAFQIADQF 95
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEK-GTTNLQRCTYLV 461
G ++ + GG +QA L +VIATPGRL D ++ T NL++ +LV
Sbjct: 96 KVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQFLV 155
Query: 462 LDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSAT 566
LDEADR+LD F ++ I D + RQTL++SAT
Sbjct: 156 LDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSAT 190
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 111 bits (267), Expect = 1e-24
Identities = 63/178 (35%), Positives = 99/178 (55%)
Frame = +3
Query: 90 RXGQSLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 269
R + + +G++++ AQ+G+GKT + + + I+ Q +R P ALVL+PTRELA Q
Sbjct: 26 RAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQALVLSPTRELANQ 80
Query: 270 IQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 449
IQ+V G+ V+ GG E R L+ G IV TPGR+ D + + +
Sbjct: 81 IQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDMIRRRNLRTRSI 140
Query: 450 TYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQI 623
LVLDEAD ML+ GF+ QI + + P Q ++ SAT P E+ ++ ++ D ++I
Sbjct: 141 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTSKFMTDPIRI 198
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 96.3 bits (229), Expect = 6e-20
Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG 296
K+++G+A+TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
Query: 297 NSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDE 470
+ V+ + GG QA L + I+IATPGRLID LE KG +L+ YLV+DE
Sbjct: 57 SGIGVKCAVIVGGIDMMSQALMLAKKPHIIIATPGRLIDHLENTKG-FSLRTLKYLVMDE 115
Query: 471 ADRMLDMGFEPQ 506
ADR+L+M FE +
Sbjct: 116 ADRILNMDFEKE 127
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 87.8 bits (208), Expect = 2e-17
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Frame = +3
Query: 120 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRG-----DGPIALVLAPTRELAQQIQQVA 284
+++ AQTGSGKTLAY+ P +VH + R G P A ++ P RELA QI + A
Sbjct: 417 HVICAAQTGSGKTLAYLAP-LVHRLREDEERHGILARLKRPRACIVVPARELATQILKTA 475
Query: 285 SEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
+ + R+ + GG ++ DLE V++++ATPG L+ + +K T+LV+
Sbjct: 476 KSLCHHARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVI 535
Query: 465 DEADRMLDMGFEPQIRKIIDQI 530
DEAD M D F+ +I+ I
Sbjct: 536 DEADTMFDASFKSLTMEILHTI 557
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 82.6 bits (195), Expect = 7e-16
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Frame = +3
Query: 111 QGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVLAPTRELAQQIQQ 278
Q ++++GVA+TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++
Sbjct: 137 QNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEE 196
Query: 279 VASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
+FG +R V GGA R ++ G E + ++++ L +N++ +
Sbjct: 197 EILKFGRPLGIRTVSVIGGAD-----RMIDMGFEPEVQ---KILEHLP--VSNVKPDSED 246
Query: 459 VLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL 605
D + MG + RQT+M++AT P +V +LA++YL
Sbjct: 247 SEDPEHLLTHMGKDKY-----------RQTVMFTATMPPQVERLAKNYL 284
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 81.8 bits (193), Expect = 1e-15
Identities = 61/197 (30%), Positives = 106/197 (53%), Gaps = 5/197 (2%)
Frame = +3
Query: 120 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEFG- 296
N++ +Q+G+GKT A++L + ++ P P + L+PT ELA+Q +VA G
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGK 198
Query: 297 NSSYVR-NTCVFGGA-PKREQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLD 467
+ +++ N V G P+ ++ D I+I TPG L+D++ K ++ + VLD
Sbjct: 199 HCPHIKINYAVRGNQFPRGQKCTD-----HIIIGTPGTLLDWIRKSKCFEPRKVSVFVLD 253
Query: 468 EADRMLDM-GFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQL 644
EAD M+ + G + Q +I + D Q L++SAT+ ++V K AE + + + I + +
Sbjct: 254 EADIMIALQGHQDQSIRIHKSLHKDCQVLLFSATYDEDVMKFAETVVPNPIIIRLRREEE 313
Query: 645 SANHNILQIVDVCQEHE 695
S + NI Q VC+ E
Sbjct: 314 SLD-NIKQYYVVCKNSE 329
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 79.8 bits (188), Expect = 5e-15
Identities = 39/121 (32%), Positives = 73/121 (60%)
Frame = +3
Query: 366 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 545
E GV++++ATPGR+++ + + +L V+DE D ML +GFE Q+++I++++ RQ
Sbjct: 253 EMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQ 312
Query: 546 TLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQ 725
T+++SAT P + +A L V I+ GS L + Q++ +E K+ +L +L+
Sbjct: 313 TMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTK-AVKQLILWVEEKSKKKQLFSILK 371
Query: 726 E 728
+
Sbjct: 372 D 372
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 78.6 bits (185), Expect = 1e-14
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 3/174 (1%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
G +L+ A++G+GKT + + A+ ++ I + ++L PTRE+A Q++ V
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENV-----ITESNCIQIIILTPTREIAVQVKDVICAI 104
Query: 294 GNSSYVRNTC-VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 470
G Y C VF G E+ + + I + TPGR+ +E+ + +LDE
Sbjct: 105 G-CHYDGLACKVFIGGISLEEDKKALKSCHIAVGTPGRVKYLIEQKYLKTESVRMFILDE 163
Query: 471 ADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXD--YVQIN 626
AD++LD F+ QI I + ++Q + +SAT+P+ + + Y+ + +V++N
Sbjct: 164 ADKLLDESFQQQINWIFSALPENKQMMAFSATYPEVLANHLKKYMTEPTFVRLN 217
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 72.5 bits (170), Expect = 8e-13
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR---GDGPIALVLAPTRELAQQI 272
SL +G+++ GVA GSGK LAY+LP I I + +GP+ L+L + ++
Sbjct: 220 SLLRGRDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARV 279
Query: 273 QQVASEF-GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRC 449
V + N R +FGG + ++ L G E+++ATP + L++ T+L R
Sbjct: 280 YGVCEDLIRNRRRTRVQMIFGGGAEEDRIVPLINGCEVLVATPPCFLRMLKRCYTSLDRL 339
Query: 450 TYLVLDEADRMLDMGFEPQIR 512
++V D+AD ML F +I+
Sbjct: 340 CHVVFDDAD-MLAEYFTAEIK 359
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 72.1 bits (169), Expect = 1e-12
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +3
Query: 435 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDY 614
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKP 72
Query: 615 VQINIGSLQLSANHNILQIV 674
V +N+G +A+ +++Q++
Sbjct: 73 VTVNVGRAG-AASLDVIQVL 91
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 72.1 bits (169), Expect = 1e-12
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +3
Query: 435 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDY 614
N+ YLVLDEADRM+DMGFE +R I + RQTL++SAT PK+++ A+ L
Sbjct: 13 NVSPYRYLVLDEADRMIDMGFEEDVRTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKP 72
Query: 615 VQINIGSLQLSANHNILQIV 674
V +N+G +A+ +++Q++
Sbjct: 73 VTVNVGRAG-AASLDVIQVL 91
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 70.1 bits (164), Expect = 4e-12
Identities = 32/70 (45%), Positives = 49/70 (70%)
Frame = +3
Query: 489 MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQ 668
MGFEP+I+KI+ IRPDRQT+M SATWP V+++A+ Y+ D V++ +G L L N+++
Sbjct: 1 MGFEPEIKKILLDIRPDRQTVMTSATWPPGVQRMADQYMTDPVRVFVGCLDL----NVIE 56
Query: 669 IVDVCQEHEK 698
++ EK
Sbjct: 57 FIEGMAPGEK 66
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 68.1 bits (159), Expect = 2e-11
Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 19/160 (11%)
Frame = +3
Query: 15 PRWRPLLXTSGIPRAAGNS--ARGTGSRX---GQSLCQGKNLVGVAQTGSGKTLAYILPA 179
P W L I RA G+ ++ T + +L ++++G A+TGSGKTLA+ +P
Sbjct: 130 PEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPI 189
Query: 180 IVHIN-------NQPPI-------RRGDGPIALVLAPTRELAQQIQQVASEFGNSSYVRN 317
I HI Q P +G +AL++APTRELA Q++ + + V+
Sbjct: 190 IQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVKDHLVKAAKYTSVKV 249
Query: 318 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 437
+ GG +Q R L++ EIV+ATPGRL + + + T+
Sbjct: 250 AAIVGGMAAPKQQRLLKQRPEIVVATPGRLWELISQVFTH 289
Score = 39.1 bits (87), Expect = 0.009
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 375 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 530
V +V+ + EK +N+Q YLV+DEADRM++ G ++ I++ I
Sbjct: 316 VVVVVVVVDTSVTNQEKHVSNIQLLRYLVIDEADRMVEQGHYEELSSILELI 367
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 66.9 bits (156), Expect = 4e-11
Identities = 42/122 (34%), Positives = 65/122 (53%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVASEF 293
GK++V +A+TGSGKT A+++P + G AL+L+PTRELA Q Q+ E
Sbjct: 318 GKDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQKFIKEL 374
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G + ++++ + GG + V+ATPGR + + + L Y+V DEA
Sbjct: 375 GRFTGLKSSVILGG--------------DSVVATPGRFLHVVMEMELKLSSVEYVVFDEA 420
Query: 474 DR 479
DR
Sbjct: 421 DR 422
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 63.3 bits (147), Expect = 5e-10
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASE 290
G +++ A++G GKT ++L + + P+ DG ++ LV+ TRELA QI +
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYER 137
Query: 291 FGN-SSYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
F S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +L
Sbjct: 138 FCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFIL 197
Query: 465 DEADRMLD 488
DE D+ML+
Sbjct: 198 DECDKMLE 205
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 63.3 bits (147), Expect = 5e-10
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVASE 290
G +++ A++G GKT ++L + + P+ DG ++ LV+ TRELA QI +
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLE---PV---DGQVSVLVMCHTRELAFQIHKEYER 137
Query: 291 FGN-SSYVRNTCVFGGAPKREQARDLERGV-EIVIATPGRLIDFLEKGTTNLQRCTYLVL 464
F S ++ FGG ++ + L+ IV+ TPGR++ + T NL+ + +L
Sbjct: 138 FCKYMSNIKIAVFFGGINIKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFIL 197
Query: 465 DEADRMLD 488
DE D+ML+
Sbjct: 198 DECDKMLE 205
>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
Length = 127
Score = 60.1 bits (139), Expect = 4e-09
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +3
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGS 635
LVLDEADRMLDMGF IR+++ ++ RQ L++SAT+ +++ LAE L + ++I + +
Sbjct: 7 LVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEV-A 65
Query: 636 LQLSANHNILQ 668
+ +A+ +LQ
Sbjct: 66 RRNTASDQVLQ 76
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 58.0 bits (134), Expect = 2e-08
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 11/189 (5%)
Frame = +3
Query: 165 YILPAIVHINNQPPIRRG---DGPIALVLAPTRELAQQIQQVASEFGNSSYVR-NTCVFG 332
Y P + + P + G G A+V++PTRELAQQI + R +
Sbjct: 183 YTTPTPIQMQATPLMAHGPKKSGFRAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKA 242
Query: 333 GAPKREQARDLERGVEIVIATPGRLIDFL--EKGTTNLQRCTYLVLDEADRMLDM---GF 497
A + +I++ TP RL+ L E L +L+LDEAD++ + GF
Sbjct: 243 NASTNTFGAKSSKRFDILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGF 302
Query: 498 EPQIRKIIDQI-RPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQ-I 671
QI I +PD ++SAT + + A +L ++V++ +G ++ SA + Q +
Sbjct: 303 REQIATIYQACNKPDIHRGLFSATLSNGIEEWAGLHLDNHVRVTVG-IRNSATATVDQEL 361
Query: 672 VDVCQEHEK 698
+ V QE K
Sbjct: 362 LFVGQESGK 370
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 56.4 bits (130), Expect = 6e-08
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Frame = +3
Query: 102 SLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ-IQQ 278
S+ K+L+ ++TG+GK+L ++LP++ Q P RG G I +V PTRELA Q + +
Sbjct: 193 SVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP-GRGYGTIIVV--PTRELASQMLYE 244
Query: 279 VASEFGNSSYVRNTCVFGGAPKREQA-RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTY 455
V+ G+ S V + ++E+ +D IVI TP RL + +++ QR
Sbjct: 245 VSRLLGDKSIVASFVSGVDLSRQEKLLKDSLHPPRIVIGTPKRLWEIVQEHEHLFQRTKR 304
Query: 456 LVLDEADRML 485
+V+DE D+ L
Sbjct: 305 IVIDEVDKTL 314
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 52.0 bits (119), Expect = 1e-06
Identities = 29/61 (47%), Positives = 35/61 (57%)
Frame = +3
Query: 225 PIALVLAPTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 404
P ALVL+PTRELA QIQ+V G+ V+ GG E R L+ G IV TPGR
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGR 63
Query: 405 L 407
+
Sbjct: 64 V 64
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 43.2 bits (97), Expect = 5e-04
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 375 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 530
V+IV TPG+L DF+ +L + + +LDEAD +L G I KI ++I
Sbjct: 136 VDIVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQGNNDLIMKIYNKI 187
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 38.7 bits (86), Expect = 0.012
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 114 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 269
GK++ A TG+GKT A++LP + + +P + LV+ PTRELA Q
Sbjct: 47 GKDVCACAATGTGKTAAFMLPILERLLYRP--TQSPAIRVLVITPTRELAIQ 96
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 38.7 bits (86), Expect = 0.012
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 315 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG 428
+ C+ GG RE LE GV +V+ TPGR+ D + +G
Sbjct: 6 HACI-GGTNVREDRMKLEEGVHVVVGTPGRVFDMINRG 42
>SB_53656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 35.9 bits (79), Expect = 0.083
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +3
Query: 420 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 530
E+ +N+Q YLV+DEADRM++ G ++ I++ I
Sbjct: 2 EEHVSNVQLLRYLVIDEADRMVEQGHYEELSSILELI 38
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 33.9 bits (74), Expect = 0.34
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +3
Query: 489 MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLXDYVQINIGSLQLSANHNILQ 668
MGFE I I+ + R+T ++SAT EV L L + V++ + +L+ N+ +
Sbjct: 1 MGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPVRVTVRE-KLTKTKNVQR 59
Query: 669 IVD-------VCQEHEKENKLNVLLQ 725
+C+ HEK ++L L+
Sbjct: 60 TPSTLQNFYLICRSHEKFSQLVAFLK 85
>SB_55048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 33.1 bits (72), Expect = 0.59
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 360 DLERGVEIVIATPGRLIDFL 419
+L+RG EI++ TPGR+ID L
Sbjct: 3 ELKRGAEIIVCTPGRMIDML 22
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 456 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 545
LVLDEAD ML+ GF+ QI + + P Q
Sbjct: 39 LVLDEADEMLNKGFKEQIYDVYRYLPPATQ 68
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 31.1 bits (67), Expect = 2.4
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = +3
Query: 117 KNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL-AQQIQQVASEF 293
+N++ TG GKT + A+V N +G + +APT+ L AQQI+
Sbjct: 128 QNIMVTLPTGLGKTF---IAAVVMYNYYRWYPQGK---VVFMAPTKPLVAQQIEACYKIM 181
Query: 294 GNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEA 473
G +T G + +L R + TP L + L +G+ LV+DEA
Sbjct: 182 GIPQ--TDTAEMTGNMAPTKRENLWRTKRVFFLTPQVLQNDLSRGSCAAADVVLLVVDEA 239
Query: 474 DRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAE 596
+ L Q+ + I + + L SAT +++ + +
Sbjct: 240 HKALGNHSYCQVVREILSYTTNFRVLALSATPGDDIKAVQQ 280
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 30.3 bits (65), Expect = 4.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 675 DVCQEHEKENKLNVLLQEIGQNQDPGARPLY--LLKLKEKR 791
DV E + EN L +L EI Q+ DP RP+ L+L +R
Sbjct: 326 DVGGEDDAENPLMMLFNEIYQHTDPTGRPMVEPFLRLPSRR 366
>SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06)
Length = 368
Score = 29.5 bits (63), Expect = 7.2
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 381 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEA-DRMLDMGFEPQIRKIIDQIRPDRQTLMW 557
++ T G L+ + E +T L +++V+DE +R + F + + + RPD + ++
Sbjct: 72 LLYCTTGILLRYFESDST-LAGVSHVVVDEVHERTEESDFLMMVLRDLIMERPDLRVILM 130
Query: 558 SATWPKEVRKLAEDYLXDYVQINI 629
SAT KL +Y D I+I
Sbjct: 131 SATLDS---KLFSEYFYDAPVIHI 151
>SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.5 bits (63), Expect = 7.2
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 669 IVDVCQEHEKENKLNVLLQEIGQNQDPG-ARPLYLLKLKEKRXTXPEISDDMD 824
+VDVC E+ K+ L +E G + PG A+ + LK + R PE+SD+ D
Sbjct: 120 VVDVCIEYIKKYGL----EEEGLFRLPGNAKHISTLKAQFNRGESPELSDEKD 168
>SB_33165| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1310
Score = 29.1 bits (62), Expect = 9.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 438 LQRCTYLVLDEADRMLDMGFEPQIRKII 521
LQRC LVLDEA +D + Q++++I
Sbjct: 1219 LQRCKVLVLDEATANVDYRTDRQVQQLI 1246
>SB_17925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1075
Score = 29.1 bits (62), Expect = 9.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 438 LQRCTYLVLDEADRMLDMGFEPQIRKII 521
LQRC LVLDEA +D + Q++++I
Sbjct: 984 LQRCKVLVLDEATANVDYRTDRQVQQLI 1011
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.1 bits (62), Expect = 9.6
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +3
Query: 66 NSARGTGSRXGQSLCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLA 245
+S R + + G + + V TG+GK+L Y LPA ++ P + LV++
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRSP-------CLTLVIS 575
Query: 246 PTRELAQQIQQVASEFGNSSYVRNTCVFGGAPKREQAR---DLERG-VEIVIATPGRLI 410
P L + Q FG ++ C+ K ++ + D+ G V +++ +P L+
Sbjct: 576 PLVSLMED-QITGLPFG----LKGACLHNNQTKPQRLKILTDITAGKVAVLLVSPEALV 629
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 29.1 bits (62), Expect = 9.6
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 90 RXGQSLCQGKNLVGVAQ-TGSGKTLAYILPAIV 185
R +++ +G+ V V+ TGSGK+L Y LPA+V
Sbjct: 25 RACETVSKGRQDVFVSMPTGSGKSLCYQLPAVV 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,327,064
Number of Sequences: 59808
Number of extensions: 795998
Number of successful extensions: 1648
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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