Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B12_e90_04.seq
         (1494 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...   149   2e-37
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   1.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   4.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   7.4  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   9.8  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score =  149 bits (361), Expect = 2e-37
 Identities = 77/212 (36%), Positives = 131/212 (61%), Gaps = 6/212 (2%)
 Frame = +3

Query: 105 LCQGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIR-RGDGPIALVLAPTRELAQQIQQ 278
           +  G++L+  AQTGSGKT A++LP I H+ + +  +  R   P  +++APTRELA QI  
Sbjct: 208 ILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHD 267

Query: 279 VASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYL 458
              +F + + ++    +GG   + Q + +  G  +++ATPGRL+DF+++G    +   ++
Sbjct: 268 EGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFV 327

Query: 459 VLDEADRMLDMGFEPQIRKIIDQI----RPDRQTLMWSATWPKEVRKLAEDYLXDYVQIN 626
           VLDEADRMLDMGF P I K++       +  RQTLM+SAT+P E+++LA  +L +Y+ + 
Sbjct: 328 VLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFSATFPAEIQELAGKFLHNYICVF 387

Query: 627 IGSLQLSANHNILQIVDVCQEHEKENKLNVLL 722
           +G +   A  ++ Q + + ++ +K  KL  +L
Sbjct: 388 VGIVG-GACADVEQTIHLVEKFKKRKKLEEIL 418



 Score = 33.9 bits (74), Expect = 0.012
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 758 TIIFVETKRKAXXXXXXXXXYGWPAVCMHXDKHSKKGMKXFXNFKEGR 901
           T++FVETKR A           +P   +H D+  ++      +FK GR
Sbjct: 426 TLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGR 473


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +2

Query: 1274 PGGPPXXXGKXXXPGXEXXXXXKPTGXXPGXXXXX*PGXXPXXNGGXXXP 1423
            P GPP   G+   PG       K     PG      PG  P  N G   P
Sbjct: 70   PVGPPGAPGRDGMPGAPGLPGSKGVKGDPGLSMVGPPG--PKGNPGLRGP 117


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 7/27 (25%)
 Frame = +1

Query: 436 TYKDAPI*FLMKLI-------ACWIWV 495
           T+KD  + FLMK+I        CW+W+
Sbjct: 769 TFKDKALEFLMKMIDIFCVWDCCWVWL 795


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 405 LIDFLEKGTTNLQRCTYLVLDEADR 479
           L+ ++E+GT  +Q  + L++DE  +
Sbjct: 133 LLQYIEQGTVRVQDISLLIVDECHK 157


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 135  PHQPSFXPDIAIGHXLSLYLVPNXLQP 55
            P      PD A+    SLY +PN ++P
Sbjct: 1261 PPASPLVPDTAVPDPHSLYAIPNKVKP 1287


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,486
Number of Sequences: 2352
Number of extensions: 28044
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 174749850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)