Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B12_e90_04.seq
         (1494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      137   2e-34
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   6.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  137 bits (332), Expect = 2e-34
 Identities = 99/303 (32%), Positives = 153/303 (50%), Gaps = 8/303 (2%)
 Frame = +3

Query: 105  LCQGKNLVGVAQTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQI 272
            +  G++L+  AQTGSGKT A+ +P I  +  +            P  ++++PTREL  QI
Sbjct: 230  IMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQI 289

Query: 273  QQVASEFGNSSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT 452
             Q   +F  +S ++    +GG     Q   L  G  I++ATPGRL+DF+EKG        
Sbjct: 290  WQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQ 349

Query: 453  YLVLDEADRMLDMGFEPQIRKIIDQ--IRP--DRQTLMWSATWPKEVRKLAEDYLXDYVQ 620
            +LVLDEADRMLDMGF P I K++D   + P  +RQTLM+SAT+P EV+ LA  +L +Y+ 
Sbjct: 350  FLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLF 409

Query: 621  INIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGARPLYLLKLKEKRXTX 800
            + +G +   A  ++ Q       ++K++ L  +L+    +   G   L  +++K+K    
Sbjct: 410  LAVGIVG-GACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFI 467

Query: 801  PEISDDMDGQLCACTXTNTARKG*SXXPILKRVVSSILVATDVGCXRS*CGMGSNFXINF 980
                 + +    +       R+        K    SILVAT V   R       +  IN+
Sbjct: 468  AVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAV-AARGLDIKNVSHVINY 526

Query: 981  DXP 989
            D P
Sbjct: 527  DLP 529


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 687 EHEKENKLNVLLQEIGQN 740
           ++  ENKLN  +++IG N
Sbjct: 213 DYNLENKLNYFIEDIGLN 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,525
Number of Sequences: 438
Number of extensions: 7836
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52156500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)